ncRNA ID | ath-miR4239 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:11368752-11368874 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 21 - UUUGUUAUUUUCGCAUGCUCC - 41 |
Stem-loop(if miRNA) |
---UC    U            C         U   C       UU    ACU   UG GCA      UUGU UGCACAUUUUGU UUUGUUAUU UCG AUGCUCC  UGAA   UUU  U   U      |||| |||||||||||| ||||||||| ||| |||||||  ||||   |||  |      AAUA ACGUGUGGAACA AAGCAAUAG GGC UACGAGG  ACUU   AAA  G   G UUUCA    U            A         C   A       UC    CUC   GU UAG |
Stem-loop sequence | UCUUGUUUGCACAUUUUGUCUUUGUUAUUUUCGCAUGCUCCUUUGAAACUUUUUGUGCAUGGAUGUGAAACUCUUCACUGGAGCAUACGGCGAUAACGAAAACAAGGUGUGCAUAUAAACUUU |
1 | PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010). |