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BaseInfo

ncRNA ID ath-miR4239
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:11368752-11368874 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - UUUGUUAUUUUCGCAUGCUCC - 41
Stem-loop(if miRNA) ---UC    U            C         U   C       UU    ACU   UG GCA
     UUGU UGCACAUUUUGU UUUGUUAUU UCG AUGCUCC  UGAA   UUU  U   U
     |||| |||||||||||| ||||||||| ||| |||||||  ||||   |||  |
     AAUA ACGUGUGGAACA AAGCAAUAG GGC UACGAGG  ACUU   AAA  G   G
UUUCA    U            A         C   A       UC    CUC   GU UAG
Stem-loop sequence UCUUGUUUGCACAUUUUGUCUUUGUUAUUUUCGCAUGCUCCUUUGAAACUUUUUGUGCAUGGAUGUGAAACUCUUCACUGGAGCAUACGGCGAUAACGAAAACAAGGUGUGCAUAUAAACUUU

Reference

1 PMID:20407023
"Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus";
Ma Z, Coruh C, Axtell MJ;
Plant Cell. 22:1090-1103(2010).