Search result

BaseInfo

ncRNA ID	ath-miR4240
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:10711558-10711762 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	155 - UGACUAGACCCGUAACAUUAC - 175
Stem-loop(if miRNA)	--CU     A C          A   C       A         -      U  C      CAU   AA      UUU      -------UC    GAUUAUUUUUCA     UUCGU G CAUGAAGUUA UGG UAGAGUG CUAGACCCG UAACAU AC AUAUAU   UUG  CUGAAA   GUUUGU         UGAG            A     ||||| | |||||||||| ||| ||||||| ||||||||| |||||| || ||||||   |||  ||||||   ||||||         ||||            G     GAGCA C GUACUUUAGU ACC AUCUCAC GAUCUGGGC AUUGUA UG UAUAUA   AGC  GAUUUU   CAAACA         AUAG            A CUCC     C A          C   U       -         U      U  C      ---   --      UUU      CGUCGGUGA    AAGCAAAACUAU
Stem-loop sequence	CUUUCGUAGCCAUGAAGUUAAUGGCUAGAGUGACUAGACCCGUAACAUUACCAUAUAUCAUUUGAACUGAAAUUUGUUUGUUCUGAGGAUUAUUUUUCAAGAUAUCAAAACGAAGAUAAGUGGCUGCACAAACUUUUUUUAGCGAAUAUAUCGUUAUGUUAUCGGGUCUAGCACUCUAUCCACUGAUUUCAUGACCACGAGCCUC

Reference

1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010).
2	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).