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BaseInfo

ncRNA ID	novel_osa_miR3661
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:27265347-27265465 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AAAUAUAAAGGAUUUUGGUUGGAU - 24
Stem-loop(if miRNA)	--AAA     AG          G             C             C   GC  G      UAUAA  GAUUUUGGUU GAUGGGACAUAUC UAGUACGACGAAU UGG  AG C      |||||  |||||||||| ||||||||||||| ||||||||||||| |||  || U      AUAUU  CUAAAACCAA CUACCUUGUAUAG AUUAUGUUGCUUA ACC  UU C GUUUG     CG          G             A             A   UA  A
Stem-loop sequence	AAAUAUAAAGGAUUUUGGUUGGAUGGGACAUAUCCUAGUACGACGAAUCUGGGCAGGCUCAUUAUCCAAAUUCGUUGUAUUAAGAUAUGUUCCAUCGAACCAAAAUCGCUUAUAGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760168.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   |||||||||||||=|||||||||| targets:1581   AUCCAACCAAAAUUCUUUAUAUUU   1604 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350559 (LOC4350559), mRNA	uncharacterized LOC4350559(LOC4350559)	coding protein	psRNATarget
AK109615.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   |||||||||||||=|||||||||| targets:1581   AUCCAACCAAAAUUCUUUAUAUUU   1604 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-137-G12, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   |||||||||||||||*|||||||| targets:1347   AUCCAACCAAAAUCCCUUAUAUUU   1370 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288801.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   ||=||||=||||||=||||||||| targets:2717   AUUCAACUAAAAUCUUUUAUAUUU   2740 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070N16, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   |||||*|||||||||*|||||||| targets:2166   AUCCACCCAAAAUCCCUUAUAUUU   2189 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
AK288546.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   |||||*|||||||||*|||||||| targets:1297   AUCCACCCAAAAUCCCUUAUAUUU   1320 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046I04, full insert sequence	NA	coding protein	psRNATarget
AK289040.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   =||||**=|||||||||||||||| targets:2304   GUCCACAUAAAAUCCUUUAUAUUU   2327 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090091O20, full insert sequence	NA	coding protein	psRNATarget
JB164206.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   ||||**|||||||||*|||||||| targets:79   AUCCCUCCAAAAUCCCUUAUAUUU   102 Target Full Sequence	2.5	Sequence 1870 from Patent EP2559767	NA	coding protein	psRNATarget
HI403745.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   ||||**|||||||||*|||||||| targets:79   AUCCCUCCAAAAUCCCUUAUAUUU   102 Target Full Sequence	2.5	Sequence 1870 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235875.1	ncRNA:24   UAGGUUGGUUUUAGGAAAUAUAAA   1   ||||**|||||||||*|||||||| targets:79   AUCCCUCCAAAAUCCCUUAUAUUU   102 Target Full Sequence	2.5	Sequence 1870 from Patent EP2985353	NA	coding protein	psRNATarget