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BaseInfo

ncRNA ID	novel_osa_miR3660
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:19877464-19877536 [+]
Reference genome	IRGSP-1.0
Source	SRR2040393;SRR2040401;SRR2857729
Length	24
Mature sequence(if miRNA)	50 - AAAUAUGAGAAAUGCUAGAAUGGC - 73
Stem-loop(if miRNA)	--                     C   ---UU   AUU   CAUUCUAGCAUUUCUCAUAUU AUA     GAU   A   ||||||||||||||||||||| |||     |||   GUAAGAUCGUAAAGAGUAUAA UAU     CUA   A CG                     A   CACAU   AGU
Stem-loop sequence	CAUUCUAGCAUUUCUCAUAUUCAUAUUGAUAUUAAUGAAUCUACACUAUAAAUAUGAGAAAUGCUAGAAUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288502.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||||||| targets:565   GUCAUUCUAGCAUUUCUCAUAUUU   588 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
XM_015767720.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||||||| targets:566   GUCAUUCUAGCAUUUCUCAUAUUU   589 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA	uncharacterized LOC4330679(LOC4330679)	coding protein	psRNATarget
AK288266.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |||||||||||||||||||||||* targets:1541   GCCAUUCUAGCAUUUCUCAUAUUC   1564 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence	NA	coding protein	psRNATarget
XM_015761672.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||=|||=||||||||||||| targets:5769   GUCAUUUUAGUAUUUCUCAUAUUU   5792 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761673.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||=|||=||||||||||||| targets:5765   GUCAUUUUAGUAUUUCUCAUAUUU   5788 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015795314.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||=||||||||||||||* targets:1742   GUCAUUCUGGCAUUUCUCAUAUUC   1765 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA	cytochrome P450 89A2(LOC4344671)	coding protein	psRNATarget
CT831392.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||=|||||||* targets:413   GUCAUUCUAGCAUUUUUCAUAUUC   436 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence	NA	coding protein	psRNATarget
CT833789.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||||=||||||||||||* targets:366   GUCAUUCUAGUAUUUCUCAUAUUC   389 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence	NA	coding protein	psRNATarget
CT833788.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||||=||||||||||||* targets:367   GUCAUUCUAGUAUUUCUCAUAUUC   390 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence	NA	coding protein	psRNATarget
AK288390.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||| targets:680   GUCAUUCUAGCAUUUCUCACAUUU   703 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
AK105572.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   ||||||=|||||||||*||||||| targets:575   GCCAUUUUAGCAUUUCCCAUAUUU   598 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-D03, full insert sequence	NA	coding protein	psRNATarget
AK289050.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |==||||||||||||||=|||||* targets:4371   GUUAUUCUAGCAUUUCUUAUAUUC   4394 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence	NA	coding protein	psRNATarget
CT827898.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   *=||||=||||||||=|||||||| targets:819   AUCAUUUUAGCAUUUUUCAUAUUU   842 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI019P11, full insert sequence	NA	coding protein	psRNATarget
AK070012.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||||=||||||||*|||| targets:2340   GUCAUUCUAGUAUUUCUCACAUUU   2363 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence	NA	coding protein	psRNATarget
XM_015774602.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   *=|||||||||||||=|||||||* targets:1009   AUCAUUCUAGCAUUUUUCAUAUUC   1032 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA	protein app1(LOC4334321)	coding protein	psRNATarget
CT832752.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   *=|||||||||||||=|||||||* targets:946   AUCAUUCUAGCAUUUUUCAUAUUC   969 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence	NA	coding protein	psRNATarget
AK069119.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   *=|||||||||||||=|||||||* targets:978   AUCAUUCUAGCAUUUUUCAUAUUC   1001 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence	NA	coding protein	psRNATarget
CT834553.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   *=|||||||||||||=|||||||* targets:882   AUCAUUCUAGCAUUUUUCAUAUUC   905 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence	NA	coding protein	psRNATarget
XM_015766661.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:5120   GUCAUUCUAUCAUUUCUCAUAUUC   5143 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X3, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766659.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:5087   GUCAUUCUAUCAUUUCUCAUAUUC   5110 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X1, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766663.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:4999   GUCAUUCUAUCAUUUCUCAUAUUC   5022 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X5, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015764779.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:4398   GUCAUUCUAGCAUUUCUCACAUUC   4421 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015766660.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:4459   GUCAUUCUAUCAUUUCUCAUAUUC   4482 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X2, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766662.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:4427   GUCAUUCUAUCAUUUCUCAUAUUC   4450 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X4, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015766665.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:4170   GUCAUUCUAUCAUUUCUCAUAUUC   4193 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X7, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
XM_015764777.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:3564   GUCAUUCUAGCAUUUCUCACAUUC   3587 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764776.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:3328   GUCAUUCUAGCAUUUCUCACAUUC   3351 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764778.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:3323   GUCAUUCUAGCAUUUCUCACAUUC   3346 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015766664.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:3750   GUCAUUCUAUCAUUUCUCAUAUUC   3773 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X6, mRNA	glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826)	coding protein	psRNATarget
AK070550.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||||||||||*||||||* targets:2617   GUCAUUCUAGCAUUUCCCAUAUUC   2640 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
AK120148.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:464   GUCAUUCUAGCAUUUCUCACAUUC   487 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence	NA	coding protein	psRNATarget
AK099623.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=||||||||||||||*||||||* targets:86   GUCAUUCUAGCAUUUCCCAUAUUC   109 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
XM_015790773.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||||||* targets:1225   GUCAUUCUAUCAUUUCUCAUAUUC   1248 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group peroxidase 1-like (LOC107275918), mRNA	peroxidase 1-like(LOC107275918)	coding protein	psRNATarget
CT837528.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||||||||||||*|||* targets:829   GUCAUUCUAGCAUUUCUCACAUUC   852 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence	NA	coding protein	psRNATarget
XM_015764968.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |=|||||||*|||||||||*|||| targets:1146   GUCAUUCUAUCAUUUCUCACAUUU   1169 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA	uncharacterized LOC9269766(LOC9269766)	coding protein	psRNATarget
CT831361.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||*||||||||| targets:1959   GACUUUCUAGCAUUGCUCAUAUUU   1982 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
XM_015763482.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||*||||||||| targets:1630   GACUUUCUAGCAUUGCUCAUAUUU   1653 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA	uncharacterized LOC4352431(LOC4352431)	coding protein	psRNATarget
AK108630.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||*||||||||| targets:1596   GACUUUCUAGCAUUGCUCAUAUUU   1619 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence	NA	coding protein	psRNATarget
XM_015766546.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:2333   GACUUUCUAGCAUUUCCCAUAUUC   2356 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:1719   GACUUUCUAGCAUUUCCCAUAUUC   1742 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766553.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||||*||||||* targets:529   GACUUUCUAGCAUUUCCCAUAUUC   552 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK072999.1	ncRNA:24   CGGUAAGAUCGUAAAGAGUAUAAA   1   |*|*||||||||||*||||||||* targets:1534   GACUUUCUAGCAUUGCUCAUAUUC   1557 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence	NA	coding protein	psRNATarget