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BaseInfo

ncRNA ID novel_osa_miR3655
Species Oryza sativa
Class miRNA
Genome position Chr11:16669741-16669904 [+]
Reference genome IRGSP-1.0
Source SRR1298758;SRR1298766;SRR2099436;SRR2458631;SRR2857731;SRR2857735;SRR4407779;SRR4407954;SRR4407961;SRR1300837;SRR1654490;SRR1738227;SRR1738237
Length 24
Mature sequence(if miRNA) 141 - GAAUGGUCAAACGUUGGACACGGA - 164
Stem-loop(if miRNA) --          -         C   C    A     UUUUUUUAUAAU     ----  -  C UUGUUGUUAGAUGAUAAAAUAUGAU
  CGUGUCCAAC UUUGACUGU CGU UUAU UGAAA            UCGUA    UU UU A                         U
  |||||||||| ||||||||| ||| |||| |||||            |||||    || || |
  GCACAGGUUG AAACUGGUA GCA AAUA ACUUU            AAUAC    UU AA U                         A
AG          C         A   A    A     ---------UUU     UUUU  U  - UUUUAUGUUCAGUGUGUAUUUUAUA
Stem-loop sequence CGUGUCCAACUUUGACUGUCCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUGAUUAAUAUUUUAUGUGUGACUUGUAUUUUUAAUUUUUUUCAUAAUUUUUUCAAAUAAAACGAAUGGUCAAACGUUGGACACGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK064197.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=||||||=|||||||||||=|||
targets:891   UUCGUGUCUAACGUUUGACCGUUC   914

2.5 Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence NA coding protein psRNATarget
XM_015792473.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  ||||||||||||||||||||||*|
targets:2592   UCCGUGUCCAACGUUUGACCAUCC   2615

1.5 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
XM_015792475.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  ||||||||||||||||||||||*|
targets:2606   UCCGUGUCCAACGUUUGACCAUCC   2629

1.5 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
AK288529.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  ||||||||||||||||||||||*|
targets:72   UCCGUGUCCAACGUUUGACCAUCC   95

1.5 Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence NA coding protein psRNATarget
AK109598.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  *||||||||=||||||||||=|||
targets:1655   ACCGUGUCCGACGUUUGACCGUUC   1678

2.5 Oryza sativa Japonica Group cDNA clone:002-137-D09, full insert sequence NA coding protein psRNATarget
AK288811.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  ||||||||=|||||||||||||*|
targets:206   UCCGUGUCUAACGUUUGACCAUCC   229

2.5 Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence NA coding protein psRNATarget
CT829159.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*||||||||||||||||||||
targets:883   UUUUUGUCCAACGUUUGACCAUUC   906

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence NA coding protein psRNATarget
XM_015768706.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=|*||||||||||||||||=|||
targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252

1.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768708.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=|*||||||||||||||||=|||
targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252

1.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768705.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=|*||||||||||||||||=|||
targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252

1.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768707.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=|*||||||||||||||||=|||
targets:1229   UUCAUGUCCAACGUUUGACCGUUC   1252

1.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
AK103228.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*||||||||||||||||||||
targets:2644   UUUUUGUCCAACGUUUGACCAUUC   2667

0.0 Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence NA coding protein psRNATarget
XM_015779878.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*||*|||||||||||||||||
targets:194   UUUUUGACCAACGUUUGACCAUUC   217

1.0 PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA AT-hook motif nuclear-localized protein 9(LOC4337449) coding protein psRNATarget
XM_015781390.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||||||||||||||||||
targets:1297   UUUUUAUCCAACGUUUGACCAUUC   1320

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781389.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||||||||||||||||||
targets:1297   UUUUUAUCCAACGUUUGACCAUUC   1320

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
AK288376.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==||*|*||||||||||||||||
targets:3188   UUUGUUUGCAACGUUUGACCAUUC   3211

2.0 Oryza sativa Japonica Group cDNA, clone: J090026K04, full insert sequence NA coding protein psRNATarget
XM_015766918.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==||*|*||||||||||||||||
targets:3182   UUUGUUUGCAACGUUUGACCAUUC   3205

2.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4325115), mRNA putative disease resistance protein RGA1(LOC4325115) coding protein psRNATarget
AK066336.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||=|||||||||||||||
targets:1625   UUUUUAUCUAACGUUUGACCAUUC   1648

2.0 Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence NA coding protein psRNATarget
XM_015756907.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||=|||||||||||||||
targets:1617   UUUUUAUCUAACGUUUGACCAUUC   1640

2.0 PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA probable inactive beta-glucosidase 33(LOC4347547) coding protein psRNATarget
AK103201.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==**||=||||||||||||||||
targets:471   UUUAAGUUCAACGUUUGACCAUUC   494

1.0 Oryza sativa Japonica Group cDNA clone:J033122B04, full insert sequence NA coding protein psRNATarget
AK242718.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*|||||||||||||||||=
targets:1874   UUUAUAUCCAACGUUUGACCAUUU   1897

2.0 Oryza sativa Japonica Group cDNA, clone: J090043O09, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |=|**||=||||||||||||=|||
targets:5279   UUCACGUUCAACGUUUGACCGUUC   5302

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
AK109674.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*|*||||||||||||||||
targets:1554   UUUAUUUGCAACGUUUGACCAUUC   1577

2.0 Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence NA coding protein psRNATarget
XM_015788430.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||||||||||*|||||||
targets:1337   UUUUUAUCCAACGUUUAACCAUUC   1360

2.5 PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA 12-oxophytodienoate reductase 1(LOC4340490) coding protein psRNATarget
XM_015758393.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*|*||||||||||||||||
targets:1684   UUUAUUUGCAACGUUUGACCAUUC   1707

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA uncharacterized LOC4348660(LOC4348660) coding protein psRNATarget
XM_015788428.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||||||||||*|||||||
targets:1479   UUUUUAUCCAACGUUUAACCAUUC   1502

2.5 PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA 12-oxophytodienoate reductase 1(LOC4340490) coding protein psRNATarget
AK105698.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*||*|||||||||||||||
targets:1113   UUUUUAUCAAACGUUUGACCAUUC   1136

2.0 Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence NA coding protein psRNATarget
AK288330.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*|*||||||||||||||||
targets:1103   UUUAUUUGCAACGUUUGACCAUUC   1126

2.0 Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence NA coding protein psRNATarget
XM_015791049.1
ncRNA:24   AGGCACAGGUUGCAAACUGGUAAG   1
  |==*|*|=*|||||||||||||||
targets:1272   UUUUUUUUAAACGUUUGACCAUUC   1295

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342493 (LOC4342493), transcript variant X1, mRNA uncharacterized LOC4342493(LOC4342493) coding protein psRNATarget
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