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BaseInfo

ncRNA ID novel_osa_miR3652
Species Oryza sativa
Class miRNA
Genome position Chr1:17625261-17625457 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR4407959;SRR1556020
Length 24
Mature sequence(if miRNA) 174 - AAGCAGUUUGACUUUGACCAAAAU - 197
Stem-loop(if miRNA) --                                  ---          C   UAU   A        A AU   UAAAU  UU       A UU    AUU
  UUUGGUCAAAGUCAAACUGCUUCAAGUUUGACUA   AGUUUAUAGA AAA   AUA UAAUAUUU C  UAC     UA  UUUAUUA A  AAUA   A
  ||||||||||||||||||||||||||||||||||   |||||||||| |||   ||| |||||||| |  |||     ||  ||||||| |  ||||
  AAACCAGUUUCAGUUUGACGAAGUUCAAACUGAU   UCAAAUAUCU UUU   UAU AUUAUAAA G  GUG     AU  AAAUAAU U  UUAU   A
UA                                  UAU          -   --U   C        A CU   -UUCU  UU       A UU    AUA
Stem-loop sequence UUUGGUCAAAGUCAAACUGCUUCAAGUUUGACUAAGUUUAUAGACAAAUAUAUAAUAAUAUUUACAUUACUAAAUUAUUUUUAUUAAAUUAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUAUCUUGUGUCGAAAAUAUUACUAUUUUUUCUAUAAACUUAUUAGUCAAACUUGAAGCAGUUUGACUUUGACCAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK068259.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:1268   ACUUUGGUCAAAGUCAAACUGCUU   1291

0.0 Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence NA coding protein psRNATarget
AK121583.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:274   ACUUUGGUCAAAGUCAAACUGCUU   297

0.0 Oryza sativa Japonica Group cDNA clone:J033037F21, full insert sequence NA coding protein psRNATarget
XM_015767191.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:329   ACUUUGGUCAAAGUCAAACUGCUU   352

0.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X6, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767185.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:363   ACUUUGGUCAAAGUCAAACUGCUU   386

0.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X1, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767192.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:362   ACUUUGGUCAAAGUCAAACUGCUU   385

0.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X7, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767188.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:1031   ACUUUGGUCAAAGUCAAACUGCUU   1054

0.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767187.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||||||||||||||||||
targets:1140   ACUUUGGUCAAAGUCAAACUGCUU   1163

0.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015755259.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*|||||||||||||||||||=||
targets:804   ACUUUGGUCAAAGUCAAACUGUUU   827

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA uncharacterized LOC4346670(LOC4346670) coding protein psRNATarget
XM_015790873.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*|||||||||||||||||||=||
targets:879   ACUUUGGUCAAAGUCAAACUGUUU   902

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343452 (LOC4343452), mRNA uncharacterized LOC4343452(LOC4343452) coding protein psRNATarget
AK288313.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  ||||||*|||||||=|||||||||
targets:848   AUUUUGAUCAAAGUUAAACUGCUU   871

2.5 Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence NA coding protein psRNATarget
AK288203.1
ncRNA:24   UAAA---ACCAGUUUCAGUUUGACGAA   1
  ||||---||||||||||||=|||||||
targets:2843   AUUUCUUUGGUCAAAGUCAGACUGCUU   2869

1.5 Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence NA coding protein psRNATarget
AK288994.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*|||*||||||||||||||||||
targets:1361   ACUUUAGUCAAAGUCAAACUGCUU   1384

1.0 Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence NA coding protein psRNATarget
XM_015793424.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  **||||||*|||||||||||||||
targets:1672   CGUUUGGUGAAAGUCAAACUGCUU   1695

1.0 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 85A2 (LOC4345521), mRNA UDP-glycosyltransferase 85A2(LOC4345521) coding protein psRNATarget
CT837874.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||||*||||||||||||=||
targets:143   ACUUUGGUGAAAGUCAAACUGUUU   166

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence NA coding protein psRNATarget
AK288358.1
ncRNA:24   UAAAACCAGUUUCAGUUUGACGAA   1
  |*||||*||||||||||||||=||
targets:894   ACUUUGCUCAAAGUCAAACUGUUU   917

2.5 Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence NA coding protein psRNATarget
AK243195.1
ncRNA:24   UAA-----AACCAGUUUCAGUUUGACGAA   1
  =||-----||*||=||||||||||||||*
targets:1202   GUUAAACCUUCGUUAAAGUCAAACUGCUA   1230

3.0 Oryza sativa Japonica Group cDNA, clone: J100040A04, full insert sequence NA coding protein psRNATarget
XM_015774077.1
ncRNA:24   UAA-----AACCAGUUUCAGUUUGACGAA   1
  =||-----||*||=||||||||||||||*
targets:1212   GUUAAACCUUCGUUAAAGUCAAACUGCUA   1240

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4327747), mRNA uncharacterized protein At4g15970(LOC4327747) coding protein psRNATarget
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