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BaseInfo

ncRNA ID	novel_osa_miR3649
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:10622208-10622283 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	21
Mature sequence(if miRNA)	56 - GCUCCUGUCGGCGUCGGCGGC - 76
Stem-loop(if miRNA)	--------   C    C    UC  C  CG    A   -  U         GCU CUGU GGCG  GG GG  GCGC GCU CC G         ||| |||| ||||  || ||  |||| ||| ||         CGG GAUA CCGC  CC CC  CGCG CGG GG U AACGAUGG   C    A    CU  A  -A    G   U  C
Stem-loop sequence	GCUCCUGUCGGCGUCGGCGGCGGCGCAGCUCCUGUCGGUGGCGGCGCACCACCUCCGCCAAUAGCGGCGGUAGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287767.1	ncRNA:21   CGGCGGCUGCGGCUGUCCUCG   1   |||||||*|||||||=||||| targets:2272   GCCGCCGCCGCCGACGGGAGC   2292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065165J10, full insert sequence	NA	coding protein	psRNATarget
XM_015783382.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:541   GCGCGCCGACGCCGACAGGAGG   562 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339328 (LOC4339328), mRNA	uncharacterized LOC4339328(LOC4339328)	coding protein	psRNATarget
AK106780.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:350   GCGCGCCGACGCCGACAGGAGG   371 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-115-H04, full insert sequence	NA	coding protein	psRNATarget
CT831537.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:350   GCGCGCCGACGCCGACAGGAGG   371 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA007I12, full insert sequence	NA	coding protein	psRNATarget