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BaseInfo

ncRNA ID	novel_osa_miR3647
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:20979794-20979853 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	24
Mature sequence(if miRNA)	37 - AUAUCCUAGUACUAUGAAUCUGGA - 60
Stem-loop(if miRNA)	--              UG          AC   AUAUCCUAGUACUA  AAUCUGGAUA  U   ||||||||||||||  ||||||||||   UGUAGGAUCAUGAU  UUAGAUCUGU  C UG              GU          CU
Stem-loop sequence	AUAUCCUAGUACUAUGAAUCUGGAUAACUCUCUGUCUAGAUUUGUAGUACUAGGAUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015770193.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||=|||||||||||||| targets:1112   UCCAGAUUCGUAGUACUAGGAUAU   1135 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK288793.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||||||* targets:861   UCCAGAUUCAUAGUACUAGGAUAC   884 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=|||||||||||||||||||=| targets:340   UCUAGAUUCAUAGUACUAGGAUGU   363 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
AK243489.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||||||=||||||=|||||||| targets:2548   UCCAGAUUUAUAGUAUUAGGAUAU   2571 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100073M12, full insert sequence	NA	coding protein	psRNATarget
JB165005.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	1.5	Sequence 2669 from Patent EP2559767	NA	coding protein	psRNATarget
HI404544.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	1.5	Sequence 2669 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236674.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	1.5	Sequence 2669 from Patent EP2985353	NA	coding protein	psRNATarget
AK107609.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=|=|||||||||||| targets:1473   UCUAGAUUCGUGGUACUAGGAUAU   1496 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-C04, full insert sequence	NA	coding protein	psRNATarget
AK120794.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||=|||||=||||||||||||=| targets:1570   UCCGGAUUCGUAGUACUAGGAUGU   1593 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023012B12, full insert sequence	NA	coding protein	psRNATarget
XM_015778463.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||=|||||=||||||||||||=| targets:1631   UCCGGAUUCGUAGUACUAGGAUGU   1654 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cis-zeatin O-glucosyltransferase 1 (LOC4336629), mRNA	cis-zeatin O-glucosyltransferase 1(LOC4336629)	coding protein	psRNATarget
AK071898.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=||||||||||||=| targets:2718   UCUAGAUUCGUAGUACUAGGAUGU   2741 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
AK288804.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||||||||||*||||||||||| targets:2555   UCCAGAUUCAUAAUACUAGGAUAU   2578 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090071D13, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=||||||||||||=| targets:2734   UCUAGAUUCGUAGUACUAGGAUGU   2757 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
XM_015767398.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=||||||||||||=| targets:3799   UCUAGAUUCGUAGUACUAGGAUGU   3822 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767397.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=||||||||||||=| targets:3802   UCUAGAUUCGUAGUACUAGGAUGU   3825 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767396.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=||||||=||||||||||||=| targets:3947   UCUAGAUUCGUAGUACUAGGAUGU   3970 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
HI403965.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*|||||||||||||||||=| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	1.5	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
JB164426.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*|||||||||||||||||=| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	1.5	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236095.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*|||||||||||||||||=| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	1.5	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=|||||||||*||||||||||| targets:56   UCUAGAUUCAUAAUACUAGGAUAU   79 Target Full Sequence	1.5	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
HI404101.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=|||||||||*||||||||||| targets:56   UCUAGAUUCAUAAUACUAGGAUAU   79 Target Full Sequence	1.5	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
JB164562.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=|||||||||*||||||||||| targets:56   UCUAGAUUCAUAAUACUAGGAUAU   79 Target Full Sequence	1.5	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
AK099750.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*||||=|||||||||||||| targets:663   UCCAAAUUCGUAGUACUAGGAUAU   686 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013092A18, full insert sequence	NA	coding protein	psRNATarget
CT831784.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*||||=|||||||||||||| targets:669   UCCAAAUUCGUAGUACUAGGAUAU   692 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA225J14, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||=|||||||||||*|| targets:1926   UCCAGAUUCGUAGUACUAGGAAAU   1949 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
HI403857.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	2.5	Sequence 1982 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235987.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	2.5	Sequence 1982 from Patent EP2985353	NA	coding protein	psRNATarget
JB164318.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||||||||||||||||||*|||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	2.5	Sequence 1982 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015785966.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |||-|||||=|||||||||||||| targets:1489   UCC-GAUUCGUAGUACUAGGAUAU   1511 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable transcription factor KAN3 (LOC4341803), mRNA	probable transcription factor KAN3(LOC4341803)	coding protein	psRNATarget
AK241705.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |=|||||||=|*|||||||||||| targets:3378   UUCAGAUUCGUUGUACUAGGAUAU   3401 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK070309.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*||||||||||||||*|||| targets:641   UCCAAAUUCAUAGUACUAGUAUAU   664 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023047B15, full insert sequence	NA	coding protein	psRNATarget
AK107145.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   *=|||||||=|||||||||*|||| targets:1251   AUCAGAUUCGUAGUACUAGAAUAU   1274 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   *=|||||||=|||||||||*|||| targets:1291   AUCAGAUUCGUAGUACUAGAAUAU   1314 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
AK241555.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |=|||||||*||*||||||||||| targets:188   UUCAGAUUCUUAAUACUAGGAUAU   211 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065178B07, full insert sequence	NA	coding protein	psRNATarget
XM_015770952.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||||*|*||=|||||||||||||| targets:1369   UCCAAAAUCGUAGUACUAGGAUAU   1392 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C (LOC4330019), mRNA	putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C(LOC4330019)	coding protein	psRNATarget
AK108711.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |=||*||||=||||*||||||||| targets:86   UUCAUAUUCGUAGUCCUAGGAUAU   109 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-150-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015770949.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |=||*||||=||||*||||||||| targets:169   UUCAUAUUCGUAGUCCUAGGAUAU   192 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X2, mRNA	ammonium transporter 3 member 3(LOC4329628)	coding protein	psRNATarget
XM_015770948.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   |=||*||||=||||*||||||||| targets:168   UUCAUAUUCGUAGUCCUAGGAUAU   191 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ammonium transporter 3 member 3 (LOC4329628), transcript variant X1, mRNA	ammonium transporter 3 member 3(LOC4329628)	coding protein	psRNATarget
AK289139.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   ||=|*||||=|*|||||||||||| targets:1355   UCUAAAUUCGUUGUACUAGGAUAU   1378 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
XM_015755470.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCCUAUA   1   **=||||||=||||||||*||||| targets:3535   AAUAGAUUCGUAGUACUAUGAUAU   3558 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative wall-associated receptor kinase-like 16 (LOC4347341), mRNA	putative wall-associated receptor kinase-like 16(LOC4347341)	coding protein	psRNATarget