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BaseInfo

ncRNA ID	novel_osa_miR3645
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:30046436-30046647 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	19
Mature sequence(if miRNA)	194 - UACAAAUCUGUAGCCUGCU - 212
Stem-loop(if miRNA)	--              C    UA    A      A CU        A             A      A  A                          UAUC   CA   UACAAAUCUGUAGC UGCU  UCUU UCUCUC U  UUUAUCUC UUAAAAUAUGUUU UAGCUG CU AUAGCCUGCUAUUGUACCUGCUCUUA    UGU  A   |||||||||||||| ||||  |||| |||||| |  |||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||    |||   AUGUUUAGACAUCG GCGA  AGAA AGAGAG A  AAAUAGAG AAUUUUAUACAAA GUCGAC GA UAUCGGACGAUAACAUGGACGAGAAU    AUA  U CG              U    CG    G      A AU        G             C      C  A                          CUCA   CC
Stem-loop sequence	UACAAAUCUGUAGCCUGCUUAUCUUAUCUCUCAUCUUUUAUCUCAUUAAAAUAUGUUUAUAGCUGACUAAUAGCCUGCUAUUGUACCUGCUCUUAUAUCUGUCAAUCCAUAACUCUAAGAGCAGGUACAAUAGCAGGCUAUAAGCCAGCUGCAAACAUAUUUUAAGGAGAUAAAUAAAGAGAGAGAAGAGCAGCGUGCUACAGAUUUGUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107762.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:913   AGCGGGCUACAGAUUUGUA   931 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-133-A10, full insert sequence	NA	coding protein	psRNATarget
AK107762.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:658   AGCGGGCUACAGAUCUGUA   676 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-133-A10, full insert sequence	NA	coding protein	psRNATarget
AK241486.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:912   AGCGGGCUACAGAUUUGUA   930 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065166L21, full insert sequence	NA	coding protein	psRNATarget
XM_015785274.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:1362   AGCGGGCUACAGAUUUGUA   1380 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281149 (LOC107281149), transcript variant X1, mRNA	uncharacterized LOC107281149(LOC107281149)	coding protein	psRNATarget
XM_015785274.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:1107   AGCGGGCUACAGAUCUGUA   1125 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281149 (LOC107281149), transcript variant X1, mRNA	uncharacterized LOC107281149(LOC107281149)	coding protein	psRNATarget
CT832222.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:1339   AGCGGGCUACAGAUUUGUA   1357 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN059B18, full insert sequence	NA	coding protein	psRNATarget
XM_015758288.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:1753   AGCGGGCUACAGAUUUGUA   1771 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group sucrose transport protein SUT3 (LOC4348577), mRNA	sucrose transport protein SUT3(LOC4348577)	coding protein	psRNATarget
AK288888.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:1468   AGCGGGCUACAGAUUUGUA   1486 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090079O09, full insert sequence	NA	coding protein	psRNATarget
AK288328.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||||| targets:709   AGCGGGCUACAGAUUUGUA   727 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence	NA	coding protein	psRNATarget
XM_015782352.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   ||==||||||||||||||| targets:1108   AGUGGGCUACAGAUUUGUA   1126 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group universal stress protein A-like protein (LOC4338972), transcript variant X1, mRNA	universal stress protein A-like protein(LOC4338972)	coding protein	psRNATarget
AK073600.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   ||==||||||||||||||| targets:1016   AGUGGGCUACAGAUUUGUA   1034 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033048I03, full insert sequence	NA	coding protein	psRNATarget
XM_015770362.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|||||=||||||||| targets:3168   AGCGGGCUAUAGAUUUGUA   3186 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330904 (LOC4330904), transcript variant X6, mRNA	uncharacterized LOC4330904(LOC4330904)	coding protein	psRNATarget
XM_015770365.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|||||=||||||||| targets:3223   AGCGGGCUAUAGAUUUGUA   3241 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330904 (LOC4330904), transcript variant X10, mRNA	uncharacterized LOC4330904(LOC4330904)	coding protein	psRNATarget
AK288873.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||=|||||||||||| targets:7507   AGCGGGUUACAGAUUUGUA   7525 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015774848.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||||||| targets:671   AGCUGGCUACAGAUUUGUA   689 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group non-specific lipid-transfer protein (LOC4333547), mRNA	non-specific lipid-transfer protein(LOC4333547)	coding protein	psRNATarget
AK062268.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||||||| targets:674   AGCUGGCUACAGAUUUGUA   692 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-100-A04, full insert sequence	NA	coding protein	psRNATarget
CT830034.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||||||| targets:680   AGCUGGCUACAGAUUUGUA   698 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034P19, full insert sequence	NA	coding protein	psRNATarget
AK067670.1	ncRNA:19   UCGU---CCGAUGUCUAAACAU   1   ||||---||||||||||||||| targets:800   AGCAACGGGCUACAGAUUUGUA   821 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013120E23, full insert sequence	NA	coding protein	psRNATarget
AK101175.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   ||||||||||||||*|||| targets:2260   AGCAGGCUACAGAUCUGUA   2278 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033029A05, full insert sequence	NA	coding protein	psRNATarget
XM_015765895.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   ||||||||||||||*|||| targets:2257   AGCAGGCUACAGAUCUGUA   2275 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327516 (LOC4327516), mRNA	uncharacterized LOC4327516(LOC4327516)	coding protein	psRNATarget
XM_015764317.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|||||||||||*||| targets:1225   AGCGGGCUACAGAUUCGUA   1243 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WAT1-related protein At5g64700-like (LOC107279778), transcript variant X3, mRNA	WAT1-related protein At5g64700-like(LOC107279778)	coding protein	psRNATarget
XM_015764316.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|||||||||||*||| targets:1404   AGCGGGCUACAGAUUCGUA   1422 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WAT1-related protein At5g64700-like (LOC107279778), transcript variant X2, mRNA	WAT1-related protein At5g64700-like(LOC107279778)	coding protein	psRNATarget
XM_015764315.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|||||||||||*||| targets:1408   AGCGGGCUACAGAUUCGUA   1426 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WAT1-related protein At5g64700-like (LOC107279778), transcript variant X1, mRNA	WAT1-related protein At5g64700-like(LOC107279778)	coding protein	psRNATarget
AK240937.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:1719   AGCGGGCUACAGAUCUGUA   1737 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065041L24, full insert sequence	NA	coding protein	psRNATarget
AK106739.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||||*|| targets:1723   AGCGGGCUACAGAUUUAUA   1741 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-B02, full insert sequence	NA	coding protein	psRNATarget
AK109519.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:2529   AGCGGGCUACAGAUCUGUA   2547 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-113-C06, full insert sequence	NA	coding protein	psRNATarget
AK289103.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:703   AGCGGGCUACAGAUCUGUA   721 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096G10, full insert sequence	NA	coding protein	psRNATarget
AK289021.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:587   AGCGGGCUACAGAUCUGUA   605 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090G05, full insert sequence	NA	coding protein	psRNATarget
AK071906.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=|*||||||||||||| targets:2697   AGCGGACUACAGAUUUGUA   2715 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013066P19, full insert sequence	NA	coding protein	psRNATarget
AK288728.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:1834   AGCGGGCUACAGAUCUGUA   1852 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063F03, full insert sequence	NA	coding protein	psRNATarget
AK288790.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:1168   AGCGGGCUACAGAUCUGUA   1186 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069P15, full insert sequence	NA	coding protein	psRNATarget
XM_015755113.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||=||||||||||*|||| targets:697   AGCGGGCUACAGAUCUGUA   715 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc-finger homeodomain protein 9 (LOC4347054), mRNA	zinc-finger homeodomain protein 9(LOC4347054)	coding protein	psRNATarget
GQ463475.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||||*||||||||*|||| targets:868   AGCAGCCUACAGAUCUGUA   886 Target Full Sequence	2.5	Oryza sativa Japonica Group cultivar Katy Pi-ta variant KPt.9 (Pi-ta) mRNA, partial sequence; alternatively spliced	NA	coding protein	psRNATarget
AK071612.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:994   AGCUGGCUACAGAUCUGUA   1012 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023104L09, full insert sequence	NA	coding protein	psRNATarget
AK106601.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:907   AGCUGGCUACAGAUCUGUA   925 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-B11, full insert sequence	NA	coding protein	psRNATarget
XM_015769902.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*|||||||*||||||| targets:1677   AGCUGGCUACAAAUUUGUA   1695 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC107278642), mRNA	putative methyltransferase DDB_G0268948(LOC107278642)	coding protein	psRNATarget
AK288437.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*|||||||*||||||| targets:8   AGCUGGCUACAAAUUUGUA   26 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget
AK288504.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:2199   AGCUGGCUACAGAUCUGUA   2217 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041G18, full insert sequence	NA	coding protein	psRNATarget
AK288832.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:2118   AGCUGGCUACAGAUCUGUA   2136 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073P17, full insert sequence	NA	coding protein	psRNATarget
XM_015769816.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:868   AGCUGGCUACAGAUAUGUA   886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X13, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769808.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:865   AGCUGGCUACAGAUAUGUA   883 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X6, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769815.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:868   AGCUGGCUACAGAUAUGUA   886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X12, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769806.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:864   AGCUGGCUACAGAUAUGUA   882 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X4, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
AK288272.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*|||||||*||||||| targets:102   AGCUGGCUACAAAUUUGUA   120 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090017B03, full insert sequence	NA	coding protein	psRNATarget
XM_015759120.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:3061   AGCUGGCUACAGAUCUGUA   3079 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1 (LOC9267886), transcript variant X1, mRNA	BTB/POZ and MATH domain-containing protein 1(LOC9267886)	coding protein	psRNATarget
AK288382.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:312   AGCUGGCUACAGAUCUGUA   330 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |||*||||||||||*|||| targets:1163   AGCUGGCUACAGAUCUGUA   1181 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget
XM_015773653.1	ncRNA:19   UCGUCCGAUGUCUAAACAU   1   |*|||||||||*||||||| targets:3146   AACAGGCUACAUAUUUGUA   3164 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267012 (LOC9267012), mRNA	uncharacterized LOC9267012(LOC9267012)	coding protein	psRNATarget