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BaseInfo

ncRNA ID	novel_osa_miR3644
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:13775398-13775494 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097779;SRR2098557;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AACCGGGACUAAAGAUAAUAGGGU - 24
Stem-loop(if miRNA)	----UUUA  G            AGAUAUA  C              UA         AU UUUAGUCCUGGU       AA AACUGGAACUAAAG  U         || ||||||||||||       || ||||||||||||||  U         UA AAAUCAGGGCCA       UU UUGGCCUUGAUUUC  G UGGGAUAA  G            ACCACAG  A              UA
Stem-loop sequence	UUUAAUGUUUAGUCCUGGUAGAUAUAAACAACUGGAACUAAAGUAUUGAUCUUUAGUUCCGGUUAUUGACACCAACCGGGACUAAAGAUAAUAGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755884.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   *|||*||||||||||||||||||| targets:1367   CCCCAAUUAUCUUUAGUCCCGGUU   1390 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288191.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   ||==|*|*|||||||||||||||| targets:1555   ACUUUUUGAUCUUUAGUCCCGGUU   1578 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UGG--GAUAAUAGAAAUCAGGGCCAA   1   *||--=|=*||||||||||||||||| targets:1413   UCCGGUUGGUAUCUUUAGUCCCGGUU   1438 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UGGGAUAA--UAGAAAUCAGGGCCAA   1   =*|*||||--|||||||||||||||| targets:38   GGCAUAUUUGAUCUUUAGUCCCGGUU   63 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   *****|||||=||||||||||||| targets:2342   UAAAGAUUAUUUUUAGUCCCGGUU   2365 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UGG--GAUAAUAGAAAUCAGGGCCAA   1   |||--|*=*||||||||||||||||| targets:1866   ACCAACCGGUAUCUUUAGUCCCGGUU   1891 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   *||||***|||||||||||||||| targets:1253   CCCCUCGGAUCUUUAGUCCCGGUU   1276 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   =*||*|**|||||||||||||||| targets:548   GGCCGAGGAUCUUUAGUCCCGGUU   571 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   =*||*|**|||||||||||||||| targets:1693   GGCCGAGGAUCUUUAGUCCCGGUU   1716 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015758676.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   |=|--=*||||||||||||||||| targets:1944   AUC--GCUAUCUUUAGUCCCGGUU   1965 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
AK241906.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   |=|--=*||||||||||||||||| targets:1704   AUC--GCUAUCUUUAGUCCCGGUU   1725 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   |=|--=*||||||||||||||||| targets:635   AUC--GCUAUCUUUAGUCCCGGUU   656 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   ==***=*||||||||||||||||| targets:2231   GUAAAGAUAUCUUUAGUCCCGGUU   2254 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UGGGAUAAUAGAAAUCAGGGCCAA   1   =****|**|||||||||||||||| targets:2190   GGGAAAAGAUCUUUAGUCCCGGUU   2213 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget