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BaseInfo

ncRNA ID	novel_osa_miR3641
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7590191-7590352 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393;SRR1738224
Length	25
Mature sequence(if miRNA)	138 - GUGUCCAACGUUUGACCGUCUGUCU - 162
Stem-loop(if miRNA)	--               C       C    A     -----------------UUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA   GUGUCCAACGUUUGA CGUCUGU UUAU UGAAA                      UA                             U   ||||||||||||||| ||||||| |||| |||||                      ||                             A   CACAGGUUGCAAACU GCAGGUA AAUA ACUUU                      CU                             A AG               A       A    A     UUUUAUACUUUUUUUAAUUUUU  GUUCAGUGCAUAUUUCAUAAUUAGUACAA
Stem-loop sequence	GUGUCCAACGUUUGACCGUCUGUCUUAUAUGAAAUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUACGUGACUUGUCUUUUUAAUUUUUUUCAUAUUUUUUUCAAAUAAAAUGGACGAUCAAACGUUGGACACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827968.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||||||||||||||||||||||| targets:461   AGACAGACGGUCAAACGUUGGACAC   485 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||||||||||||||||||| targets:3071   AGACGGACGGUCAAACGUUGGACAC   3095 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
XM_015761929.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||||||||||||||||||| targets:21   AGACGGACGGUCAAACGUUGGACAC   45 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4350187)	coding protein	psRNATarget
XM_015787694.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||==|||||||||||||||||||| targets:1491   AGAUGGACGGUCAAACGUUGGACAC   1515 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||==|||||||||||||||||||| targets:1373   AGAUGGACGGUCAAACGUUGGACAC   1397 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
XM_015782022.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||||||||||||||||=||| targets:1539   AGACGGACGGUCAAACGUUGGGCAC   1563 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
AK065567.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||||||||||||||||=||| targets:963   AGACGGACGGUCAAACGUUGGGCAC   987 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013033D20, full insert sequence	NA	coding protein	psRNATarget
AK288264.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||||||||||||||||=||| targets:93   AGACGGACGGUCAAACGUUGGGCAC   117 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090016E18, full insert sequence	NA	coding protein	psRNATarget
XM_015782023.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||||||||||||||||=||| targets:2581   AGACGGACGGUCAAACGUUGGGCAC   2605 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
AK070212.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||||||||||||||||=||| targets:2263   AGACGGACGGUCAAACGUUGGGCAC   2287 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   *||==|||||||||||||||||||| targets:1245   CGAUGGACGGUCAAACGUUGGACAC   1269 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
AK108746.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |*||=|||||||||||||||||||| targets:1438   AAACGGACGGUCAAACGUUGGACAC   1462 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-150-E12, full insert sequence	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*||||||||||||||||||| targets:52   AGACGAACGGUCAAACGUUGGACAC   76 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
AK289090.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||==|||||||||||||||||=|= targets:988   AGAUGGACGGUCAAACGUUGGAUAU   1012 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence	NA	coding protein	psRNATarget
AK288670.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|||||||||||||||=||| targets:1068   AGACGAACGGUCAAACGUUGGGCAC   1092 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090058O04, full insert sequence	NA	coding protein	psRNATarget
XM_015791929.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=||||||||||||||||= targets:172   AGACGAAUGGUCAAACGUUGGACAU   196 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein YABBY 1 (LOC4342449), transcript variant X2, mRNA	protein YABBY 1(LOC4342449)	coding protein	psRNATarget
XM_015791928.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=||||||||||||||||= targets:172   AGACGAAUGGUCAAACGUUGGACAU   196 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein YABBY 1 (LOC4342449), transcript variant X1, mRNA	protein YABBY 1(LOC4342449)	coding protein	psRNATarget
AK120952.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=||||||||||||||||= targets:177   AGACGAAUGGUCAAACGUUGGACAU   201 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023038N03, full insert sequence	NA	coding protein	psRNATarget
CT836285.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=||*||||||||*|||||||| targets:169   AGACGGAAGGUCAAACAUUGGACAC   193 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA054I07, full insert sequence	NA	coding protein	psRNATarget
XM_015791152.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||*||||||||||*||||| targets:27   AGACGGACCGUCAAACGUUAGACAC   51 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343919 (LOC4343919), transcript variant X1, mRNA	uncharacterized LOC4343919(LOC4343919)	coding protein	psRNATarget
XM_015791153.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||*||||||||||*||||| targets:27   AGACGGACCGUCAAACGUUAGACAC   51 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343919 (LOC4343919), transcript variant X2, mRNA	uncharacterized LOC4343919(LOC4343919)	coding protein	psRNATarget
AK068975.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||*||||||||||*||||| targets:2297   AGACGGACCGUCAAACGUUAGACAC   2321 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013170L10, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=|||*|||||||||||*|||| targets:2487   AGACGGACAGUCAAACGUUGUACAC   2511 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=|||=||||||||||||* targets:1748   AGACGAAUGGUUAAACGUUGGACAA   1772 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
AK064477.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=||||||||||||*|||| targets:75   AGACGAAUGGUCAAACGUUGUACAC   99 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-111-A02, full insert sequence	NA	coding protein	psRNATarget
XM_015787999.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |*||=||||||||||||||*||||= targets:883   AAACGGACGGUCAAACGUUAGACAU   907 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X2, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
XM_015787998.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |*||=||||||||||||||*||||= targets:1683   AAACGGACGGUCAAACGUUAGACAU   1707 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable glycosyltransferase At5g25310 (LOC107278352), transcript variant X1, mRNA	probable glycosyltransferase At5g25310(LOC107278352)	coding protein	psRNATarget
AK072517.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   ||||=*|=||||||||||||*|||| targets:1804   AGACGAAUGGUCAAACGUUGUACAC   1828 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
XM_015794016.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   *|||=||||*||||||||||*|||| targets:283   UGACGGACGAUCAAACGUUGAACAC   307 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281994 (LOC107281994), transcript variant X1, mRNA	uncharacterized LOC107281994(LOC107281994)	coding protein	psRNATarget
JB164256.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||=|-|||||=||||||||*|||| targets:143   AGAUA-ACGGUUAAACGUUGAACAC   166 Target Full Sequence	2.5	Sequence 1920 from Patent EP2559767	NA	coding protein	psRNATarget
HI403795.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||=|-|||||=||||||||*|||| targets:143   AGAUA-ACGGUUAAACGUUGAACAC   166 Target Full Sequence	2.5	Sequence 1920 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235925.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |||=|-|||||=||||||||*|||| targets:143   AGAUA-ACGGUUAAACGUUGAACAC   166 Target Full Sequence	2.5	Sequence 1920 from Patent EP2985353	NA	coding protein	psRNATarget
CT836215.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |*||=*|||||||||||||*||||= targets:1152   AAACGAACGGUCAAACGUUAGACAU   1176 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA223F11, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:25   UCUGUCUGCCAGUUUGCAACCUGUG   1   |*|=|*|=|||||||||||*||||| targets:1502   AAAUAAAUGGUCAAACGUUAGACAC   1526 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget