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BaseInfo

ncRNA ID	novel_osa_miR3639
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:14349685-14349784 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097779;SRR2098560;SRR1555751;SRR2099745;SRR4407779;SRR1556016;SRR1556018;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AUGAAUGUAGACAAUGCUAGAAAG - 24
Stem-loop(if miRNA)	--          UC C    A   A                  A   CAU   UUCUAGCAUU  C ACAU CAU UAGAUGUUAAUGAAUCUA ACA   A   ||||||||||  | |||| ||| |||||||||||||||||| |||   AAGAUCGUAA  G UGUA GUA AUCUACGAUUACUUAGAU UGU   C GA          CA A    A   A                  C   AUA
Stem-loop sequence	UUCUAGCAUUUCCCACAUACAUAUAGAUGUUAAUGAAUCUAAACACAUACAUAUGUCUAGAUUCAUUAGCAUCUAAAUGAAUGUAGACAAUGCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767211.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:4019   CUUUCUAGCAUUGUCCACAUUCAU   4042 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767214.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:3952   CUUUCUAGCAUUGUCCACAUUCAU   3975 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767212.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:3923   CUUUCUAGCAUUGUCCACAUUCAU   3946 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767217.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:3856   CUUUCUAGCAUUGUCCACAUUCAU   3879 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767215.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:3797   CUUUCUAGCAUUGUCCACAUUCAU   3820 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767218.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:3701   CUUUCUAGCAUUGUCCACAUUCAU   3724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
AK073522.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:2490   CUUUCUAGCAUUGUCCACAUUCAU   2513 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence	NA	coding protein	psRNATarget
XM_015764678.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:1606   CUUUCUAGCAUUGUCCACAUUCAU   1629 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
CT835628.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:1170   CUUUCUAGCAUUGUCCACAUUCAU   1193 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence	NA	coding protein	psRNATarget
XM_015790894.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||||||||||*|||||||| targets:556   CUUUCUAGCAUUGUCCACAUUCAU   579 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA	uncharacterized LOC107276821(LOC107276821)	coding protein	psRNATarget
AK067363.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   ||||=||||||||||||=|||||* targets:967   CUUUUUAGCAUUGUCUAUAUUCAA   990 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||*|||||*|||||||||| targets:2975   CUUUCUAACAUUGCCUACAUUCAU   2998 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
XM_015755177.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||*|||||||*|||||||| targets:1754   CUUUCUACCAUUGUCCACAUUCAU   1777 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA	glutathione S-transferase T3(LOC4346703)	coding protein	psRNATarget
AK242012.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||||||*|||||||*|||||||| targets:716   CUUUCUAUCAUUGUCCACAUUCAU   739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence	NA	coding protein	psRNATarget
XM_015778351.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   ||||*||||||||*|||||||||| targets:640   CUUUGUAGCAUUGGCUACAUUCAU   663 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA	UPF0426 protein At1g28150, chloroplastic(LOC4336466)	coding protein	psRNATarget
AK065957.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   ||||*||||||||*|||||||||| targets:582   CUUUGUAGCAUUGGCUACAUUCAU   605 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013044D08, full insert sequence	NA	coding protein	psRNATarget
LQ236076.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||*|||||||||||*|||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2985353	NA	coding protein	psRNATarget
JB164407.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||*|||||||||||*|||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2559767	NA	coding protein	psRNATarget
HI403946.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |||*|||||||||||*|||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2074227	NA	coding protein	psRNATarget
CT837804.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   ||||=||*|||||*|||||||||| targets:873   CUUUUUAUCAUUGCCUACAUUCAU   896 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence	NA	coding protein	psRNATarget
XM_015775040.1	ncRNA:24   GAAAGAUCGUAACAGAUGUAAGUA   1   |*|||||*||||*||||||||||| targets:1210   CAUUCUAACAUUUUCUACAUUCAU   1233 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA	senescence-specific cysteine protease SAG39-like(LOC107280424)	coding protein	psRNATarget