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BaseInfo

ncRNA ID novel_osa_miR3638
Species Oryza sativa
Class miRNA
Genome position Chr1:19007189-19007292 [-]
Reference genome IRGSP-1.0
Source SRR2040393
Length 24
Mature sequence(if miRNA) 1 - GAAUGUGAGAAAUACUAGAAUGAC - 24
Stem-loop(if miRNA) --        C                 A                   GAAU
  CAUUUUAG AUUUUUCACAUUCAUAU GAUGUUAAUGAAUCUAGAU    A
  |||||||| ||||||||||||||||| |||||||||||||||||||
  GUAAGAUC UAAAGAGUGUAAGUAUA CUACAAUUACUUAGAUCUG    U
CA        A                 A                   UAUA
Stem-loop sequence CAUUUUAGCAUUUUUCACAUUCAUAUAGAUGUUAAUGAAUCUAGAUGAAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUGUGAGAAAUACUAGAAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288952.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||||||||||||||||
targets:259   GUCAUUCUAGUAUUUCUCACAUUC   282

0.0 Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence NA coding protein psRNATarget
AK070012.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||||||||||||||||=
targets:2340   GUCAUUCUAGUAUUUCUCACAUUU   2363

1.0 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
CT833789.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||||||||||||=||||
targets:366   GUCAUUCUAGUAUUUCUCAUAUUC   389

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence NA coding protein psRNATarget
CT833788.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||||||||||||=||||
targets:367   GUCAUUCUAGUAUUUCUCAUAUUC   390

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence NA coding protein psRNATarget
XM_015764779.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:4398   GUCAUUCUAGCAUUUCUCACAUUC   4421

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015767758.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||||||||*|||||||
targets:3750   GUCAUUCUAGUAUUUCCCACAUUC   3773

1.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA transcription factor bHLH68(LOC4325885) coding protein psRNATarget
XM_015764777.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:3564   GUCAUUCUAGCAUUUCUCACAUUC   3587

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764776.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:3328   GUCAUUCUAGCAUUUCUCACAUUC   3351

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764778.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:3323   GUCAUUCUAGCAUUUCUCACAUUC   3346

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK120148.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:464   GUCAUUCUAGCAUUUCUCACAUUC   487

1.0 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
CT837593.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||||||||*|||||||
targets:92   GUCAUUCUAGUAUUUCCCACAUUC   115

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||||||||||
targets:829   GUCAUUCUAGCAUUUCUCACAUUC   852

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
XM_015787270.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||||||||*|||||||
targets:1542   GUCAUUUUAGUAUUUCCCACAUUC   1565

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA uncharacterized LOC4341670(Os06g0647801) coding protein psRNATarget
AK288390.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*||||||||||||=
targets:680   GUCAUUCUAGCAUUUCUCACAUUU   703

2.0 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
AK106303.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||||||||*|||||||
targets:1548   GUCAUUUUAGUAUUUCCCACAUUC   1571

2.5 Oryza sativa Japonica Group cDNA clone:002-101-C07, full insert sequence NA coding protein psRNATarget
XM_015758813.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||||||||*|||||||
targets:1553   GUCAUUUUAGUAUUUCCCACAUUC   1576

2.5 PREDICTED: Oryza sativa Japonica Group protein NEN1 (LOC9268899), transcript variant X2, mRNA protein NEN1(LOC9268899) coding protein psRNATarget
XM_015758812.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||||||||*|||||||
targets:1380   GUCAUUUUAGUAUUUCCCACAUUC   1403

2.5 PREDICTED: Oryza sativa Japonica Group protein NEN1 (LOC9268899), transcript variant X1, mRNA protein NEN1(LOC9268899) coding protein psRNATarget
AK243498.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||||||||*|||||||
targets:1387   GUCAUUUUAGUAUUUCCCACAUUC   1410

2.5 Oryza sativa Japonica Group cDNA, clone: J100074F07, full insert sequence NA coding protein psRNATarget
AK070352.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*||||=||||||||
targets:419   GUCAUUCUAGCAUUUUUCACAUUC   442

2.5 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
XM_015792577.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||=|||*||||||||||||*
targets:1439   GUCAUUUUAGCAUUUCUCACAUUG   1462

3.0 PREDICTED: Oryza sativa Japonica Group calcineurin subunit B (LOC4345696), transcript variant X1, mRNA calcineurin subunit B(LOC4345696) coding protein psRNATarget
AK240884.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  *|||||=|||||||||*|||||||
targets:419   AUCAUUUUAGUAUUUCCCACAUUC   442

2.5 Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence NA coding protein psRNATarget
AK288229.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:3666   GUCAUUCUAGCAUUUCCCACAUUC   3689

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence NA coding protein psRNATarget
XM_015780916.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:4739   GUCAUUCUAGCAUUUCCCACAUUC   4762

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:4730   GUCAUUCUAGCAUUUCCCACAUUC   4753

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780917.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:4681   GUCAUUCUAGCAUUUCCCACAUUC   4704

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015783728.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:2801   GUCAUUCUAGCAUUUCCCACAUUC   2824

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA uncharacterized LOC9271594(LOC9271594) coding protein psRNATarget
XM_015770157.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||==||*||||||||||||||||=
targets:4109   GUUGUUAUAGUAUUUCUCACAUUU   4132

2.0 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015770158.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||==||*||||||||||||||||=
targets:4109   GUUGUUAUAGUAUUUCUCACAUUU   4132

2.0 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015781780.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:3146   GUCAUUCUAGCAUUUCCCACAUUC   3169

2.5 PREDICTED: Oryza sativa Japonica Group protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC4337402), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 2(LOC4337402) coding protein psRNATarget
XM_015760919.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:17   GUCAUUCUAGCAUUUCCCACAUUC   40

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350122 (LOC4350122), mRNA uncharacterized LOC4350122(LOC4350122) coding protein psRNATarget
XM_015779937.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:981   GUCAUUCUAGCAUUUCCCACAUUC   1004

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
XM_015779938.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:889   GUCAUUCUAGCAUUUCCCACAUUC   912

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
AK099655.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:696   GUCAUUCUAGCAUUUCCCACAUUC   719

2.5 Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence NA coding protein psRNATarget
CT831791.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||*|*|||||||||||||
targets:1762   GUCAUUCUUGCAUUUCUCACAUUC   1785

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241K23, full insert sequence NA coding protein psRNATarget
XM_015760082.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:1496   GUCAUUCUAGCAUUUCCCACAUUC   1519

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA putative protease Do-like 14(LOC4350193) coding protein psRNATarget
AK106586.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:615   GUCAUUCUAGCAUUUCCCACAUUC   638

2.5 Oryza sativa Japonica Group cDNA clone:002-111-E12, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:1515   GUCAUUCUAGCAUUUCCCACAUUC   1538

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK287994.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:1466   GUCAUUCUAGCAUUUCCCACAUUC   1489

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
XM_015795143.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||*||||||*|||||||
targets:1283   GUCAUUCUAUUAUUUCCCACAUUC   1306

2.5 PREDICTED: Oryza sativa Japonica Group tetraketide alpha-pyrone reductase 1 (LOC4346033), mRNA tetraketide alpha-pyrone reductase 1(LOC4346033) coding protein psRNATarget
AK061459.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||==||*||||||||||||||||=
targets:1315   GUUGUUAUAGUAUUUCUCACAUUU   1338

2.0 Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence NA coding protein psRNATarget
CT837490.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:838   GUCAUUCUAGCAUUUCCCACAUUC   861

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:985   GUCAUUCUAGCAUUUCCCACAUUC   1008

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
XM_015771203.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||*||||||*|||||||
targets:36   GUCAUUCUAUUAUUUCCCACAUUC   59

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X2, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
XM_015771202.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||*||||||*|||||||
targets:36   GUCAUUCUAUUAUUUCCCACAUUC   59

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X1, mRNA uncharacterized LOC107278672(LOC107278672) coding protein psRNATarget
XM_015788299.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:630   GUCAUUCUAGCAUUUCCCACAUUC   653

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X1, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788302.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:608   GUCAUUCUAGCAUUUCCCACAUUC   631

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X3, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788300.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:599   GUCAUUCUAGCAUUUCCCACAUUC   622

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X2, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
AK100772.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||||||||||*|||||*|||||||
targets:601   GUCAUUCUAGCAUUUCCCACAUUC   624

2.5 Oryza sativa Japonica Group cDNA clone:J023120A05, full insert sequence NA coding protein psRNATarget
XM_015768952.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||*|||||||||||||*||||||=
targets:608   GUAAUUCUAGUAUUUCACACAUUU   631

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269313 (LOC9269313), mRNA uncharacterized LOC9269313(LOC9269313) coding protein psRNATarget
XM_015761417.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||=||*|||||||||*|||||||
targets:330   GUCGUUAUAGUAUUUCCCACAUUC   353

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA uncharacterized LOC9270662(LOC9270662) coding protein psRNATarget
AK288266.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |*||||||||*||||||||=||||
targets:1541   GCCAUUCUAGCAUUUCUCAUAUUC   1564

2.5 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
XM_015764968.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  |||||||||**||||||||||||=
targets:1146   GUCAUUCUAUCAUUUCUCACAUUU   1169

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA uncharacterized LOC9269766(LOC9269766) coding protein psRNATarget
AK064502.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  ||*|||||||||||||*||||||=
targets:504   GUAAUUCUAGUAUUUCACACAUUU   527

2.5 Oryza sativa Japonica Group cDNA clone:002-111-D06, full insert sequence NA coding protein psRNATarget
XM_015795234.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  *|||||||*|*|||||||||||||
targets:1757   UUCAUUCUUGCAUUUCUCACAUUC   1780

2.0 PREDICTED: Oryza sativa Japonica Group glycoprotein 3-alpha-L-fucosyltransferase A (LOC4345809), mRNA glycoprotein 3-alpha-L-fucosyltransferase A(LOC4345809) coding protein psRNATarget
AK099681.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  *|||||||*|*|||||||||||||
targets:1766   UUCAUUCUUGCAUUUCUCACAUUC   1789

2.0 Oryza sativa Japonica Group cDNA clone:J013071F22, full insert sequence NA coding protein psRNATarget
XM_015763411.1
ncRNA:24   CAGUAAGAUCAUAAAGAGUGUAAG   1
  **|*||=|||||||*|||||||||
targets:1147   AACUUUUUAGUAUUACUCACAUUC   1170

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327906 (LOC4327906), mRNA uncharacterized LOC4327906(LOC4327906) coding protein psRNATarget