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BaseInfo

ncRNA ID	novel_osa_miR3635
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:27371169-27371291 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	23
Mature sequence(if miRNA)	1 - AGAUUUAUCUCGCAAUUUACAUG - 23
Stem-loop(if miRNA)	--      C       CG     A  A          AU    -CA       ----     UA   UGUAAA UGCGAGA  AAUUU UU AGUCUAAUUA  CCGU   UUAGCAA    AUGUU  C   |||||| |||||||  ||||| || ||||||||||  ||||   |||||||    |||||   ACAUUU ACGCUCU  UUAGA AA UCGGAUUAAU  GGUA   AAUUGUU    UACGA  U GU      A       AU     A  A          AC    CUA       ACAC     UG
Stem-loop sequence	UGUAAACUGCGAGACGAAUUUAUUAAGUCUAAUUAAUCCGUCAUUAGCAAAUGUUUACUGUAGCAUCACAUUGUUAAAUCAUGGCAUAAUUAGGCUAAAAAGAUUUAUCUCGCAAUUUACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837782.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   |=|||||||||||||||=||||| targets:744   CGUGUAAAUUGCGAGAUGAAUCU   766 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
XM_015791314.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   ||||||||||||||||*|||||| targets:1868   CAUGUAAAUUGCGAGACAAAUCU   1890 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget
XM_015775042.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   |=||||||||||||||*|||||| targets:1081   CGUGUAAAUUGCGAGACAAAUCU   1103 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X1, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015775044.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   |=||||||||||||||*|||||| targets:1081   CGUGUAAAUUGCGAGACAAAUCU   1103 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X3, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015772097.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   |*||||||*|||||||||||||| targets:1824   CCUGUAAACUGCGAGAUAAAUCU   1846 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA	cinnamate beta-D-glucosyltransferase(LOC4328553)	coding protein	psRNATarget
XM_015789357.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   ||-|*||||||||||||=||||| targets:1013   CA-GGAAAUUGCGAGAUGAAUCU   1034 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789358.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   ||-|*||||||||||||=||||| targets:1048   CA-GGAAAUUGCGAGAUGAAUCU   1069 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X3, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789356.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   ||-|*||||||||||||=||||| targets:1042   CA-GGAAAUUGCGAGAUGAAUCU   1063 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
AK240803.1	ncRNA:23   GUACAUUUAACGCUCUAUUUAGA   1   ||-|*||||||||||||=||||| targets:953   CA-GGAAAUUGCGAGAUGAAUCU   974 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065005A21, full insert sequence	NA	coding protein	psRNATarget