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BaseInfo

ncRNA ID novel_osa_miR3632
Species Oryza sativa
Class miRNA
Genome position Chr12:22562683-22562761 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1555749;SRR1555751;SRR1556011;SRR1556016;SRR1556018;SRR1556020;SRR1654491
Length 24
Mature sequence(if miRNA) 1 - AAUUUUUAGUUGGUGUACAUGGUG - 24
Stem-loop(if miRNA) --  G     A     -       ----    UGUAU      U
  CC AUGUA UGCUA UUGAAAG    CACA     GAAUUU U
  || ||||| ||||| |||||||    ||||     ||||||
  GG UACAU GUGGU GAUUUUU    GUGU     UUUAGA C
GU  -     -     U       AAUA    --UUU      U
Stem-loop sequence CCGAUGUAAUGCUAUUGAAAGCACAUGUAUGAAUUUUUCUAGAUUUUUUUGUGAUAAUUUUUAGUUGGUGUACAUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288868.1
ncRNA:24   GUGGUACAUGUGGUUGAUUUUUAA   1
  ||||||||||||||||||||||||
targets:4179   CACCAUGUACACCAACUAAAAAUU   4202

0.0 Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence NA coding protein psRNATarget
CT828650.1
ncRNA:24   GUGGUACAUGUGGUUGAUUUUUAA   1
  ||||=|||||||||||||||||||
targets:474   CACCGUGUACACCAACUAAAAAUU   497

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006N06, full insert sequence NA coding protein psRNATarget
AK070664.1
ncRNA:24   GUG-GUACAUGUGGUUGAUUUUUAA   1
  |||-|=||*||||||||||||||*|
targets:492   CACACGUGCACACCAACUAAAAAAU   516

2.5 Oryza sativa Japonica Group cDNA clone:J023056O15, full insert sequence NA coding protein psRNATarget