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BaseInfo

ncRNA ID	novel_osa_miR3630
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:42085956-42086127 [+]
Reference genome	IRGSP-1.0
Source	SRR2040393;SRR2040408;SRR2040409;SRR3123651;SRR1738240
Length	22
Mature sequence(if miRNA)	1 - UUUUUAUUUGCACUGUUUGACC - 22
Stem-loop(if miRNA)	--          C         C       A     C    -UU  U  AAAU   UAUUUAUUUUAU     A    -CUUU   A   UUUUUAUUUG ACUGUUUGA CAUUCGU UUAUU AAAA   UU UG    UAU            UUAUG CUUA     AUU U   |||||||||| ||||||||| ||||||| ||||| ||||   || ||    |||            ||||| ||||     ||| C   AAAAAUGAAU UGACAAAUU GUGAGCA AAUAA UUUU   AA AC    AUA            AAUAC GAAU     UAA C UC          A         A       G     U    UUU  C  GUUU   UUUUUUGCUUUU     -    UUCAU   A
Stem-loop sequence	UUUUUAUUUGCACUGUUUGACCAUUCGUAUUAUUCAAAAUUUUUUGAAAUUAUUAUUUAUUUUAUUUAUGACUUACUUUAUUAUCCAAAUUACUUUAAGCAUAAUUUUCGUUUUUUAUAUUUGCACAAUUUUUUUUAAUAAGACGAGUGAUUAAACAGUAUAAGUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837645.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   |||||||||||||||=|||||* targets:611   GGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
XM_015782265.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   ***||=|||||||||||||||| targets:558   UUACAGACAGUGCAAAUAAAAA   579 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC4337746), mRNA	1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1(LOC4337746)	coding protein	psRNATarget
CT837700.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   **|||||*|||*|||||||||| targets:727   CCUCAAAAAGUACAAAUAAAAA   748 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120G20, full insert sequence	NA	coding protein	psRNATarget