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BaseInfo

ncRNA ID	novel_osa_miR3628
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:24016705-24016841 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097778;SRR2098560;SRR2098823;SRR2099746;SRR4407775;SRR1556020
Length	24
Mature sequence(if miRNA)	114 - AUCUUGGACUAAUUCGUGAGACGA - 137
Stem-loop(if miRNA)	--AUCUU                     C A               UC        CCU    GA   U        GGACUAAUUCGUGAGACGAAU U UUGAGCCUAAUUAAU  AUGAUUAG   AUGU  UGC A        ||||||||||||||||||||| | |||||||||||||||  ||||||||   ||||  |||        UUUGAUUAGGCACUCUGUUUA A AAUUCGGAUUAAUUA  UAUUAAUC   UACA  AUG C AUUUACU                     A A               GA        UCU    -A   A
Stem-loop sequence	AUCUUGGACUAAUUCGUGAGACGAAUCUAUUGAGCCUAAUUAAUUCAUGAUUAGCCUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUUGUCUCACGGAUUAGUUUUCAUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833304.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=|||||||||||||||| targets:1337   UCGUCUCGCGAAUUAGUCCAAGAU   1360 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK120728.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=|||||||||||||||| targets:1504   UCGUCUCGCGAAUUAGUCCAAGAU   1527 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence	NA	coding protein	psRNATarget
AK100421.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=|||||||||||||||| targets:1532   UCGUCUCGCGAAUUAGUCCAAGAU   1555 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=|||||||||||||||| targets:5631   UCGUCUCGCGAAUUAGUCCAAGAU   5654 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK101033.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||=||||| targets:1938   UCGUCUCGCGAAUUAGUCUAAGAU   1961 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||=||||| targets:1937   UCGUCUCGCGAAUUAGUCUAAGAU   1960 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767213.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||=||||| targets:1955   UCGUCUCGCGAAUUAGUCUAAGAU   1978 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK287827.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||||||=| targets:2089   UCGUCUCGCGAAUUAGUCCAAGGU   2112 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
XM_015769942.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   ||||||===||||||||||||||| targets:1835   UCGUCUUGUGAAUUAGUCCAAGAU   1858 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328317 (LOC4328317), mRNA	uncharacterized LOC4328317(LOC4328317)	coding protein	psRNATarget
AK103177.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||||||*| targets:1332   UCGUCUCGCGAAUUAGUCCAAGCU   1355 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||||||*| targets:1688   UCGUCUCGCGAAUUAGUCCAAGCU   1711 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
AK073850.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||||||*| targets:1671   UCGUCUCGCGAAUUAGUCCAAGCU   1694 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   |||||||=||||||||||||||*| targets:685   UCGUCUCGCGAAUUAGUCCAAGCU   708 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   AGCAGAGUGCUUAAUCAGGUUCUA   1   ||*||||=|||||||||||||||| targets:1483   UCAUCUCGCGAAUUAGUCCAAGAU   1506 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget