Search result

BaseInfo

ncRNA ID novel_osa_miR3625
Species Oryza sativa
Class miRNA
Genome position Chr12:4877958-4878130 [+]
Reference genome IRGSP-1.0
Source SRR2040393;SRR2040397;SRR2040399;SRR2097778;SRR1555749;SRR2857734;SRR3123646;SRR4407775;SRR1556016;SRR5351740;SRR1738228
Length 22
Mature sequence(if miRNA) 1 - UUUUUGCUUACAACGUUUGACC - 22
Stem-loop(if miRNA) --         A                           A         C    AUAAAAAAUGAAAAA     -    AAG  C  U
  UUUUUGCUU CAACGUUUGACCACUCGUCUUAUUCAA UUUUUUUUG AAAU               UUGUG CUUA   UA UG A
  ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||               ||||| ||||   || ||
  AAAAACGAA GUUGCAAACUGGUGAGCAGAAUAAGUU AAAAAAAAC UUUA               AACAC GAAU   AU AU G
UC         C                           -         -    AUAAUAAUUAAAAUA     U    GAA  A  A
Stem-loop sequence UUUUUGCUUACAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUUGCAAAUAUAAAAAAUGAAAAAUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUUAAUAAUAAUUUCAAAAAAAAUUGAAUAAGACGAGUGGUCAAACGUUGCAAGCAAAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015767620.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||||||||||||
targets:1977   GGUCAAACGUUGUAAGCAAAAA   1998

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA uncharacterized LOC4324862(LOC4324862) coding protein psRNATarget
AK289081.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||||||||||||
targets:2991   GGUCAAACGUUGUAAGCAAAAA   3012

0.0 Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence NA coding protein psRNATarget
XM_015767968.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  *|||||||||||||||||||||
targets:1586   AGUCAAACGUUGUAAGCAAAAA   1607

0.0 PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA altered inheritance rate of mitochondria protein 25(LOC4328840) coding protein psRNATarget
AK102017.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||*|||||||||
targets:1059   GGUCAAACGUUGCAAGCAAAAA   1080

1.5 Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence NA coding protein psRNATarget
AK100009.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||*|||||||||
targets:1040   GGUCAAACGUUGCAAGCAAAAA   1061

1.5 Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence NA coding protein psRNATarget
AK064773.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||*|||||||||
targets:3060   GGUCAAACGUUGCAAGCAAAAA   3081

1.5 Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence NA coding protein psRNATarget
AK288920.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||||||*|||||||||
targets:4056   GGUCAAACGUUGCAAGCAAAAA   4077

1.5 Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence NA coding protein psRNATarget
JB165009.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=||||*|||||||||
targets:159   GGUCAAAUGUUGCAAGCAAAAA   180

2.5 Sequence 2673 from Patent EP2559767 NA coding protein psRNATarget
HI404548.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=||||*|||||||||
targets:159   GGUCAAAUGUUGCAAGCAAAAA   180

2.5 Sequence 2673 from Patent EP2074227 NA coding protein psRNATarget
LQ236678.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=||||*|||||||||
targets:159   GGUCAAAUGUUGCAAGCAAAAA   180

2.5 Sequence 2673 from Patent EP2985353 NA coding protein psRNATarget
XM_015772731.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=|||*||||||||||
targets:342   GGUCAAAUGUUAUAAGCAAAAA   363

2.5 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 6.1 (LOC4326444), mRNA protein NRT1/ PTR FAMILY 6.1(LOC4326444) coding protein psRNATarget
AK289089.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=||||*|||||||||
targets:1454   GGUCAAAUGUUGCAAGCAAAAA   1475

2.5 Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence NA coding protein psRNATarget
XM_015790883.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |||||||=||||*|||||||||
targets:1915   GGUCAAAUGUUGCAAGCAAAAA   1936

2.5 PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA 7-deoxyloganetic acid glucosyltransferase(LOC9267967) coding protein psRNATarget
AK288846.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  *|||||||*|||||||||||||
targets:1381   AGUCAAACAUUGUAAGCAAAAA   1402

1.0 Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence NA coding protein psRNATarget
XM_015773783.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |*||||||||||*|||||||||
targets:1980   GAUCAAACGUUGCAAGCAAAAA   2001

1.5 PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA alanine aminotransferase 2(LOC9266500) coding protein psRNATarget
XM_015773784.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  |*||||||||||*|||||||||
targets:2074   GAUCAAACGUUGCAAGCAAAAA   2095

1.5 PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA alanine aminotransferase 2(LOC9266500) coding protein psRNATarget
XM_015773291.1
ncRNA:22   CCAGUUUGCAACAUUCGUUUUU   1
  ||||||||**||||||||||||
targets:2292   GGUCAAACAAUGUAAGCAAAAA   2313

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA uncharacterized LOC9272202(LOC9272202) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.