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BaseInfo

ncRNA ID	novel_osa_miR3622
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:17611792-17611893 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	24
Mature sequence(if miRNA)	1 - GCUUAAAAGAUUCGUCUCACGAUU - 24
Stem-loop(if miRNA)	--C  C                   ------   ----      A    UGG        CG GAGACGAAUCUUUUAAGCC      GUC    AUUAGC CAUG   GUUAC    || |||||||||||||||||||      |||    |||||| ||||   ||||U    GC CUCUGCUUAGAAAAUUCGG      CAG    UAAUCG GUAU   UAAUG UUA  A                   AUUAAU   AUAU      -    UCA
Stem-loop sequence	CCGCGAGACGAAUCUUUUAAGCCGUCAUUAGCACAUGUGGGUUACUGUAAUACUUAUGGCUAAUUAUAGACUAAUUAGGCUUAAAAGAUUCGUCUCACGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015769825.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|||||||||||||||||||| targets:627   AAUUGUGAGACGAAUCUUUUAAGC   650 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|||||||||||||||||||| targets:632   AAUUGUGAGACGAAUCUUUUAAGC   655 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
AK241427.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=||||||||||||||||=||| targets:1430   AAUUGUGAGACGAAUCUUUUGAGC   1453 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065161N01, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||||*|||||||||||||||||| targets:1162   AAUCGCGAGACGAAUCUUUUAAGC   1185 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget
CT837735.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||||||||*|||||||||||=||| targets:359   AAUCGUGACACGAAUCUUUUGAGC   382 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA009K07, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||||*|||||||||||||||||= targets:718   AAUCGCGAGACGAAUCUUUUAAGU   741 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK288422.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=*||||||||||||||||||| targets:616   AAUUAUGAGACGAAUCUUUUAAGC   639 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090032F09, full insert sequence	NA	coding protein	psRNATarget
AK288308.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||||*||||||||||||||=||| targets:374   AAUCGCGAGACGAAUCUUUUGAGC   397 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H07, full insert sequence	NA	coding protein	psRNATarget
CT831729.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||||*|||||||=|||||||||| targets:367   AAUCGCGAGACGAGUCUUUUAAGC   390 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence	NA	coding protein	psRNATarget
CT828685.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||||||||||||||| targets:798   AAUUGCGAGACGAAUCUUUUAAGC   821 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence	NA	coding protein	psRNATarget
AK063539.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||||*||||||||||||||=||| targets:2015   AAUCGCGAGACGAAUCUUUUGAGC   2038 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-117-C04, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||||||||||||||| targets:748   AAUUGCGAGACGAAUCUUUUAAGC   771 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
AK243163.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||||||||||||||| targets:206   AAUUGCGAGACGAAUCUUUUAAGC   229 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100034L01, full insert sequence	NA	coding protein	psRNATarget
XM_015775745.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||||||||||||||| targets:262   AAUUGCGAGACGAAUCUUUUAAGC   285 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription factor BHLH148 (LOC4334060), mRNA	transcription factor BHLH148(LOC4334060)	coding protein	psRNATarget
AK240803.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:958   AAUUGCGAGAUGAAUCUUUUAAGC   981 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065005A21, full insert sequence	NA	coding protein	psRNATarget
XM_015789356.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:1047   AAUUGCGAGAUGAAUCUUUUAAGC   1070 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789358.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:1053   AAUUGCGAGAUGAAUCUUUUAAGC   1076 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X3, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789357.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:1018   AAUUGCGAGAUGAAUCUUUUAAGC   1041 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015782486.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||||||=||| targets:1351   AAUUGCGAGACGAAUCUUUUGAGC   1374 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At5g45910 (LOC9269310), mRNA	GDSL esterase/lipase At5g45910(LOC9269310)	coding protein	psRNATarget
AK241401.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||||||=||| targets:1352   AAUUGCGAGACGAAUCUUUUGAGC   1375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065158N07, full insert sequence	NA	coding protein	psRNATarget
AK103332.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=*|||||=||||||||||||| targets:947   AAUUUUGAGAUGAAUCUUUUAAGC   970 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033125N22, full insert sequence	NA	coding protein	psRNATarget
AK099913.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:703   AAUUGCGAGAUGAAUCUUUUAAGC   726 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067679.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||||||=||| targets:2098   AAUUGCGAGACGAAUCUUUUGAGC   2121 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:750   AAUUGCGAGAUGAAUCUUUUAAGC   773 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=**||||||||||||||=||| targets:1434   AAUUACGAGACGAAUCUUUUGAGC   1457 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288192.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=**||||=||||||||||||| targets:1845   AAUUACGAGAUGAAUCUUUUAAGC   1868 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||=||||||||||||| targets:1946   AAUUGCGAGAUGAAUCUUUUAAGC   1969 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   *|||-|||||=|||||=|||||||| targets:2064   UAUCUGUGAGGCGAAUUUUUUAAGC   2088 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK103177.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   ||||-|*|||||||||=|||||||| targets:1230   AAUCCGCGAGACGAAUUUUUUAAGC   1254 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   ||||-|*|||||||||=|||||||| targets:1586   AAUCCGCGAGACGAAUUUUUUAAGC   1610 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
AK287827.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   ||||-|*|||||||||=|||||||| targets:1988   AAUCUGCGAGACGAAUUUUUUAAGC   2012 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
AK073850.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   ||||-|*|||||||||=|||||||| targets:1569   AAUCCGCGAGACGAAUUUUUUAAGC   1593 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   ||||-|*|||||||||=|||||||| targets:584   AAUCCGCGAGACGAAUUUUUUAAGC   608 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK288184.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |*|=|*|||||||||||||||||| targets:867   AUUUGCGAGACGAAUCUUUUAAGC   890 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||||||||*| targets:1041   AAUUGCGAGACGAAUCUUUUAAAC   1064 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
AK071854.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||||||||*| targets:523   AAUUGCGAGACGAAUCUUUUAACC   546 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023117P14, full insert sequence	NA	coding protein	psRNATarget
AK064090.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||||**||||||||||||||=||| targets:1252   AAUCACGAGACGAAUCUUUUGAGC   1275 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence	NA	coding protein	psRNATarget
XM_015775044.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||*|||||||||||| targets:1087   AAUUGCGAGACAAAUCUUUUAAGC   1110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X3, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
XM_015775042.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||||*|||||||||||| targets:1087   AAUUGCGAGACAAAUCUUUUAAGC   1110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group two pore potassium channel a (LOC4334137), transcript variant X1, mRNA	two pore potassium channel a(LOC4334137)	coding protein	psRNATarget
AK288843.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=*||||||||||*|||||||| targets:2123   AAUUAUGAGACGAAUAUUUUAAGC   2146 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK288995.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=**|||||||||||||||||| targets:1067   AAUUACGAGACGAAUCUUUUAAGC   1090 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|**||||||||||||||||| targets:1683   AAUUGCAAGACGAAUCUUUUAAGC   1706 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
AK288244.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*||*||||||||||||||=||| targets:1651   AACCGCGAGACGAAUCUUUUGAGC   1674 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*|||*|||||||||||||| targets:2591   AAUUGCGAGUCGAAUCUUUUAAGC   2614 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK288369.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=|*||||||||||*||||||| targets:2717   AAUUGCGAGACGAAUCGUUUAAGC   2740 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090025P19, full insert sequence	NA	coding protein	psRNATarget
AK061025.1	ncRNA:24   UUAGC-ACUCUGCUUAGAAAAUUCG   1   |||=*-||||||||||||||||||= targets:461   AAUUUAUGAGACGAAUCUUUUAAGU   485 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-204-F04, full insert sequence	NA	coding protein	psRNATarget
CT827964.1	ncRNA:24   UUAGC-ACUCUGCUUAGAAAAUUCG   1   |||=*-||||||||||||||||||= targets:478   AAUUUAUGAGACGAAUCUUUUAAGU   502 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C24, full insert sequence	NA	coding protein	psRNATarget
AK288298.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   **|=|*|||||||||||||||||= targets:1389   CCUUGCGAGACGAAUCUUUUAAGU   1412 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090019N21, full insert sequence	NA	coding protein	psRNATarget
AK072891.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||||**||||=||||||||||||* targets:867   AAUCACGAGAUGAAUCUUUUAAGA   890 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence	NA	coding protein	psRNATarget
AK288779.1	ncRNA:24   UUAG-CACUCUGCUUAGAAAAUUCG   1   |||=-|*||||||||||||||||*| targets:718   AAUUUGCGAGACGAAUCUUUUAAAC   742 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090068O07, full insert sequence	NA	coding protein	psRNATarget
CT828121.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   |||=**||||||||||||||||*| targets:487   AAUUACGAGACGAAUCUUUUAAAC   510 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029E11, full insert sequence	NA	coding protein	psRNATarget
AK102878.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*=|*|||||||||||*|||||| targets:2045   AACUGCGAGACGAAUCUAUUAAGC   2068 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015785585.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*=|*|||||||||||*|||||| targets:2116   AACUGCGAGACGAAUCUAUUAAGC   2139 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785584.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*=|*|||||||||||*|||||| targets:2249   AACUGCGAGACGAAUCUAUUAAGC   2272 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK103572.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*=|*|||||||||||*|||||| targets:2727   AACUGCGAGACGAAUCUAUUAAGC   2750 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033132N13, full insert sequence	NA	coding protein	psRNATarget
AK065982.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   ||*=|*|||||||||||*|||||| targets:2788   AACUGCGAGACGAAUCUAUUAAGC   2811 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence	NA	coding protein	psRNATarget
AK288436.1	ncRNA:24   UUAGCACUCUGCUUAGAAAAUUCG   1   **|=|**||||||||||||||||| targets:5404   CUUUGCAAGACGAAUCUUUUAAGC   5427 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090033P03, full insert sequence	NA	coding protein	psRNATarget