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BaseInfo

ncRNA ID	novel_osa_miR3621
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:23494082-23494195 [-]
Reference genome	IRGSP-1.0
Source	SRR2040393;SRR2857734
Length	25
Mature sequence(if miRNA)	1 - AUGGAAAAUGUUAGAAUGACUUACA - 25
Stem-loop(if miRNA)	--CAAA                  C   CA                 AUACA      U       UCAUUCUAGUAUUUUCCA AUU  UAUUGAUGUUAAUGAAU     UAGAUA A       |||||||||||||||||| |||  |||||||||||||||||     ||||||       AGUAAGAUUGUAAAAGGU UAA  AUAACUACAAUUACUUA     AUCUGU U ACAUUC                  A   AA                 ----G      A
Stem-loop sequence	CAAAUCAUUCUAGUAUUUUCCACAUUCAUAUUGAUGUUAAUGAAUAUACAUAGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAAAAAUAUGGAAAAUGUUAGAAUGACUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779859.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |||||||||||=||=|||||||||| targets:922   UGUAAGUCAUUUUAGCAUUUUCCAU   946 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA	formin-like protein 3(LOC4335722)	coding protein	psRNATarget
AK288871.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:4279   UGUAAGUCAUUCUAGCAUUUUCCAC   4303 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
XM_015789040.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:4713   UGUAAGUCAUUCUAGCAUUUUCCAC   4737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
AK121342.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:4547   UGUAAGUCAUUCUAGCAUUUUCCAC   4571 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
AK120281.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:1045   UGUAAGUCAUUCUAGCAUUUUCCAC   1069 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence	NA	coding protein	psRNATarget
XM_015778179.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:1624   UGUAAGUCAUUCUAGCAUUUUCCAC   1648 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA	methylthioribose kinase 2(LOC107276080)	coding protein	psRNATarget
AK241002.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |||||||||||||||=||||||||* targets:1561   UGUAAGUCAUUCUAAUAUUUUCCAC   1585 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065053D12, full insert sequence	NA	coding protein	psRNATarget
XM_015764394.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||=|||||||||* targets:1296   UGUAAGUCAUUCUAGCAUUUUCCAC   1320 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA	vesicle-associated membrane protein 721(LOC4352920)	coding protein	psRNATarget
XM_015756761.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*||||||||||||=|||||||||| targets:3347   UAUAAGUCAUUCUAGCAUUUUCCAU   3371 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249)	coding protein	psRNATarget
XM_015793334.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*|||||||||||||||||||=||| targets:1729   UAUAAGUCAUUCUAACAUUUUUCAU   1753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793335.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*|||||||||||||||||||=||| targets:1711   UAUAAGUCAUUCUAACAUUUUUCAU   1735 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793336.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*|||||||||||||||||||=||| targets:1558   UAUAAGUCAUUCUAACAUUUUUCAU   1582 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
AK070890.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*||||||||||||||||||||||* targets:904   UAUAAGUCAUUCUAACAUUUUCCAC   928 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023069D18, full insert sequence	NA	coding protein	psRNATarget
XM_015790274.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||||||||*|||* targets:1959   UGUAAGUCAUUCUAACAUUUCCCAC   1983 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X1, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015790275.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   ||||||||||||||||||||*|||* targets:1710   UGUAAGUCAUUCUAACAUUUCCCAC   1734 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X2, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015773673.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*||||||||||||=|||||||||* targets:1763   UAUAAGUCAUUCUAGCAUUUUCCAC   1787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA	cytochrome P450 78A5(LOC4333404)	coding protein	psRNATarget
XM_015775040.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*||||||||||||||||||||=|* targets:1203   UAUAAGUCAUUCUAACAUUUUCUAC   1227 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA	senescence-specific cysteine protease SAG39-like(LOC107280424)	coding protein	psRNATarget
XM_015778215.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAAGGUA   1   |*|||||=*||*||||||||||||| targets:2270   UAUAAGUUUUUGUAACAUUUUCCAU   2294 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor AIL5 (LOC4337245), mRNA	AP2-like ethylene-responsive transcription factor AIL5(LOC4337245)	coding protein	psRNATarget