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BaseInfo

ncRNA ID	novel_osa_miR3620
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:22206663-22206717 [+]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	21
Mature sequence(if miRNA)	1 - GCUCCUGUCGGCGUCGGCGGC - 21
Stem-loop(if miRNA)	--   C      GC  C     C  CG   GCU CUGUCG  GU GGCGG GG  C   ||| ||||||  || ||||| ||  A   CGA GGCGGC  UA CCGCC CC  C AA   C      GA  A     U  AC
Stem-loop sequence	GCUCCUGUCGGCGUCGGCGGCGGCGCACCACCUCCGCCAAUAGCGGCGGCAGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287767.1	ncRNA:21   CGGCGGCUGCGGCUGUCCUCG   1   |||||||*|||||||=||||| targets:2272   GCCGCCGCCGCCGACGGGAGC   2292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065165J10, full insert sequence	NA	coding protein	psRNATarget
XM_015783382.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:541   GCGCGCCGACGCCGACAGGAGG   562 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339328 (LOC4339328), mRNA	uncharacterized LOC4339328(LOC4339328)	coding protein	psRNATarget
AK106780.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:350   GCGCGCCGACGCCGACAGGAGG   371 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-115-H04, full insert sequence	NA	coding protein	psRNATarget
CT831537.1	ncRNA:21   CG-GCGGCUGCGGCUGUCCUCG   1   ||-||||||||||||||||||* targets:350   GCGCGCCGACGCCGACAGGAGG   371 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA007I12, full insert sequence	NA	coding protein	psRNATarget