Search result

BaseInfo

ncRNA ID	novel_osa_miR3617
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:22532790-22532851 [+]
Reference genome	IRGSP-1.0
Source	SRR2040393
Length	24
Mature sequence(if miRNA)	39 - AUGUGCAUAGCCAGAAAUAAGAUC - 62
Stem-loop(if miRNA)	--           U        C    C  A   UUUUAUUUCUG CUAUGCAC UGGA AA U   ||||||||||| |||||||| |||| ||   AGAAUAAAGAC GAUACGUG ACUU UU A CU           C        U    A  U
Stem-loop sequence	UUUUAUUUCUGUCUAUGCACCUGGACAAAUAUUUAUUCAUGUGCAUAGCCAGAAAUAAGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100013.1	ncRNA:24   CUAGAAUAAAGACCGAUACGUGUA   1   |||||||||||||||||||||||| targets:895   GAUCUUAUUUCUGGCUAUGCACAU   918 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013142C13, full insert sequence	NA	coding protein	psRNATarget
XM_015781188.1	ncRNA:24   CUAGAAUAAAGACCGAUACGUGUA   1   |||-|||||||||||*|||||||| targets:890   GAU-UUAUUUCUGGCCAUGCACAU   912 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DNA mismatch repair protein MSH1, mitochondrial (LOC4336345), transcript variant X1, mRNA	DNA mismatch repair protein MSH1, mitochondrial(LOC4336345)	coding protein	psRNATarget
AK067042.1	ncRNA:24   CUAGAAUAAAGACCGAUACGUGUA   1   |||-|||||||||||*|||||||| targets:877   GAU-UUAUUUCUGGCCAUGCACAU   899 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013090K16, full insert sequence	NA	coding protein	psRNATarget
XM_015781189.1	ncRNA:24   CUAGAAUAAAGACCGAUACGUGUA   1   |||-|||||||||||*|||||||| targets:824   GAU-UUAUUUCUGGCCAUGCACAU   846 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DNA mismatch repair protein MSH1, mitochondrial (LOC4336345), transcript variant X2, mRNA	DNA mismatch repair protein MSH1, mitochondrial(LOC4336345)	coding protein	psRNATarget