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BaseInfo

ncRNA ID novel_osa_miR3616
Species Oryza sativa
Class miRNA
Genome position Chr10:14748392-14748480 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2097778;SRR2098822;SRR2099567;SRR4407960;SRR1556020;SRR1654490
Length 21
Mature sequence(if miRNA) 1 - UGGGCAAUGCUAGAAAGUCAU - 21
Stem-loop(if miRNA) --                             U      UAUCGU
  GACUUUCUAGCAUUGCCCACAUUCAUAUA AUGUUA      C
  ||||||||||||||||||||||||||||| ||||||      A
  CUGAAAGAUCGUAACGGGUGUAAGUAUAU UACAAU      C
UA                             C      UACUUA
Stem-loop sequence GACUUUCUAGCAUUGCCCACAUUCAUAUAUAUGUUAUAUCGUCACAUUCAUUAACAUCUAUAUGAAUGUGGGCAAUGCUAGAAAGUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288826.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |||||||||||||||||||||
targets:1366   AUGACUUUCUAGCAUUGCCCA   1386

0.0 Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence NA coding protein psRNATarget
CT835594.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:381   AUAAGACUUUCUAGCAUUGCCCA   403

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021O24, full insert sequence NA coding protein psRNATarget
XM_015765335.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:1193   AUAAGACUUUCUAGCAUUGCCCA   1215

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
CT837661.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:1193   AUAAGACUUUCUAGCAUUGCCCA   1215

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence NA coding protein psRNATarget
XM_015765333.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:2092   AUAAGACUUUCUAGCAUUGCCCA   2114

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
XM_015765337.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:2707   AUAAGACUUUCUAGCAUUGCCCA   2729

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X5, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
XM_015787709.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:529   AUAAGACUUUCUAGCAUUGCCCA   551

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA uncharacterized LOC4340081(Os06g0142000) coding protein psRNATarget
XM_015787712.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:529   AUAAGACUUUCUAGCAUUGCCCA   551

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA uncharacterized LOC4340081(Os06g0142000) coding protein psRNATarget
XM_015763234.1
ncRNA:21   UA--CUGAAAGAUCGUAACGGGU   1
  ||--|||||||||||||||||||
targets:6280   AUAAGACUUUCUAGCAUUGCCCA   6302

2.5 PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA F-box protein At5g25290(LOC4326973) coding protein psRNATarget
XM_015795868.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||||||
targets:1160   AAGACUUUCUAGCAUUGCCCA   1180

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA uncharacterized LOC107277671(LOC107277671) coding protein psRNATarget
AK066283.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||||||
targets:947   AAGACUUUCUAGCAUUGCCCA   967

0.0 Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence NA coding protein psRNATarget
AK119344.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||||||
targets:1163   AAGACUUUCUAGCAUUGCCCA   1183

0.0 Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence NA coding protein psRNATarget
XM_015769168.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||||||
targets:2672   AAGACUUUCUAGCAUUGCCCA   2692

0.0 PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA probable splicing factor 3A subunit 1(LOC4328860) coding protein psRNATarget
CT836048.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||||=|
targets:445   AAGACUUUCUAGCAUUGCCUA   465

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence NA coding protein psRNATarget
CT835628.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||=|||
targets:1166   AAGACUUUCUAGCAUUGUCCA   1186

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence NA coding protein psRNATarget
CT833624.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||=|||
targets:1039   AAGACUUUCUAGCAUUGUCCA   1059

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence NA coding protein psRNATarget
AK068294.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||||||||=|||
targets:1817   AAGACUUUCUAGCAUUGUCCA   1837

1.5 Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence NA coding protein psRNATarget
AK108630.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||||=||
targets:1594   AAGACUUUCUAGCAUUGCUCA   1614

1.5 Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence NA coding protein psRNATarget
XM_015763482.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||||=||
targets:1628   AAGACUUUCUAGCAUUGCUCA   1648

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA uncharacterized LOC4352431(LOC4352431) coding protein psRNATarget
AK072999.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||||=||
targets:1532   AAGACUUUCUAGCAUUGCUCA   1552

1.5 Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence NA coding protein psRNATarget
AK072517.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||||||=
targets:1322   AAGACUUUCUAGCAUUGCCCG   1342

1.0 Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence NA coding protein psRNATarget
XM_015757225.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||||||
targets:2286   AAAACUUUCUAGCAUUGCCCA   2306

1.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA pentatricopeptide repeat-containing protein At1g08610(LOC4348896) coding protein psRNATarget
AK103437.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||||||
targets:2358   AAAACUUUCUAGCAUUGCCCA   2378

1.0 Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence NA coding protein psRNATarget
XM_015766553.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:527   AAGACUUUCUAGCAUUUCCCA   547

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:1717   AAGACUUUCUAGCAUUUCCCA   1737

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:2331   AAGACUUUCUAGCAUUUCCCA   2351

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:2697   AAGACUUUCUAGCAUUUCCCA   2717

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:2697   AAGACUUUCUAGCAUUUCCCA   2717

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766546.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*||||||||||||||*||||
targets:2697   AAGACUUUCUAGCAUUUCCCA   2717

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
AK242153.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  *|||=|||||||||||*||||
targets:1037   UUGAUUUUCUAGCAUUCCCCA   1057

2.5 Oryza sativa Japonica Group cDNA, clone: J075153O10, full insert sequence NA coding protein psRNATarget
XM_015790894.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||=|||
targets:552   AACACUUUCUAGCAUUGUCCA   572

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA uncharacterized LOC107276821(LOC107276821) coding protein psRNATarget
AK059715.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |*|||||||||*|||||||||
targets:30   AAGACUUUCUAACAUUGCCCA   50

1.5 Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence NA coding protein psRNATarget
AK061398.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||=|||
targets:1172   AAAACUUUCUAGCAUUGUCCA   1192

2.5 Oryza sativa Japonica Group cDNA clone:006-305-F03, full insert sequence NA coding protein psRNATarget
XM_015776800.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||=|||
targets:2039   AAAACUUUCUAGCAUUGUCCA   2059

2.5 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At2g42960 (LOC4324601), transcript variant X2, mRNA probable receptor-like protein kinase At2g42960(LOC4324601) coding protein psRNATarget
AK288568.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  |**||||||||||||||=|||
targets:1381   AAAACUUUCUAGCAUUGUCCA   1401

2.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
XM_015795993.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1681   CGUUCUUUCUAGCAUUGCCCA   1701

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X9, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795990.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1683   CGUUCUUUCUAGCAUUGCCCA   1703

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X6, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795989.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1703   CGUUCUUUCUAGCAUUGCCCA   1723

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X5, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795985.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1709   CGUUCUUUCUAGCAUUGCCCA   1729

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X1, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795994.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1710   CGUUCUUUCUAGCAUUGCCCA   1730

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X10, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795986.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1711   CGUUCUUUCUAGCAUUGCCCA   1731

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X2, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795992.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1713   CGUUCUUUCUAGCAUUGCCCA   1733

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X8, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795988.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1764   CGUUCUUUCUAGCAUUGCCCA   1784

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X4, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795991.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1909   CGUUCUUUCUAGCAUUGCCCA   1929

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X7, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795987.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ****|||||||||||||||||
targets:1964   CGUUCUUUCUAGCAUUGCCCA   1984

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X3, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
AK064487.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  ||||=*|*|||||||||||||
targets:1017   AUGAUAUGCUAGCAUUGCCCA   1037

3.0 Oryza sativa Japonica Group cDNA clone:002-111-B09, full insert sequence NA coding protein psRNATarget
AK243383.1
ncRNA:21   UACUGAAAGAUCGUAACGGGU   1
  *|*|||||||||||||*||||
targets:1149   CUAACUUUCUAGCAUUACCCA   1169

2.5 Oryza sativa Japonica Group cDNA, clone: J100063E02, full insert sequence NA coding protein psRNATarget
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