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BaseInfo

ncRNA ID	novel_osa_miR3615
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:8997153-8997206 [+]
Reference genome	IRGSP-1.0
Source	SRR2040392;SRR5049790
Length	24
Mature sequence(if miRNA)	31 - GUCCAGAUUCAUCGUACUAGAAUA - 54
Stem-loop(if miRNA)	--         UAC            A   UUCUAGUAU   GAAUCUGGACAU C   |||||||||   ||||||||||||   AAGAUCAUG   CUUAGACCUGUA A AU         CUA            U
Stem-loop sequence	UUCUAGUAUUACGAAUCUGGACAUACAUAUGUCCAGAUUCAUCGUACUAGAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242632.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||||||||||||||||||||||| targets:325   UAUUCUAGUACGAUGAAUCUGGAC   348 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence	NA	coding protein	psRNATarget
AK107495.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||||||||||*|||||||||||= targets:930   UAUUCUAGUACUAUGAAUCUGGAU   953 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
AK063452.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||*|||||||*|||||||||||= targets:119   UAUCCUAGUACUAUGAAUCUGGAU   142 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
XM_015758930.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   *=|*|||||||*|||||||||||| targets:1111   CGUCCUAGUACAAUGAAUCUGGAC   1134 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X4, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
XM_015758929.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   *=|*|||||||*|||||||||||| targets:1660   CGUCCUAGUACAAUGAAUCUGGAC   1683 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X3, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
AK120243.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   *=|*|||||||*|||||||||||| targets:6281   CGUCCUAGUACAAUGAAUCUGGAC   6304 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence	NA	coding protein	psRNATarget
XM_015782022.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||*|*|||||*|||||||||||| targets:1315   UAUCCAAGUACAAUGAAUCUGGAC   1338 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015763036.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||*||||*||*|||||||||||| targets:151   UAUCCUAGGACAAUGAAUCUGGAC   174 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group CEN-like protein 2 (LOC4351520), mRNA	CEN-like protein 2(LOC4351520)	coding protein	psRNATarget
XM_015782023.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   |||*|*|||||*|||||||||||| targets:2357   UAUCCAAGUACAAUGAAUCUGGAC   2380 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
AK063200.1	ncRNA:24   AUAAGAUCAUGCUACUUAGACCUG   1   ||**||||||=*|||||||||||| targets:496   UAACCUAGUAUAAUGAAUCUGGAC   519 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-112-C07, full insert sequence	NA	coding protein	psRNATarget