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BaseInfo

ncRNA ID	novel_osa_miR3610
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:25357610-25357721 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098823;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AUGAAAAAUGCUAGAAUGACUUAU - 24
Stem-loop(if miRNA)	--                  C  C            A          UAAA      U   AAGUCAUUCUAGCAUUUU CA AUUCAUAUUGAU UUAAUGAAUU    UAGAUA A   |||||||||||||||||| || |||||||||||| ||||||||||    ||||||   UUCAGUAAGAUCGUAAAA GU UGAGUAUAACUA AAUUACUUAG    AUCUGU C UA                  A  A            C          ----      A
Stem-loop sequence	AAGUCAUUCUAGCAUUUUCCACAUUCAUAUUGAUAUUAAUGAAUUUAAAUAGAUAUACAUGUCUAGAUUCAUUAACAUCAAUAUGAGUAUGAAAAAUGCUAGAAUGACUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT831392.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||||||| targets:409   GUAAGUCAUUCUAGCAUUUUUCAU   432 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence	NA	coding protein	psRNATarget
AK288216.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||||||=||||||||||||| targets:2083   GUAAGUCAUUUUAGCAUUUUUCAU   2106 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||||||=||||||||||||| targets:2078   GUAAGUCAUUUUAGCAUUUUUCAU   2101 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
XM_015763560.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||||=|| targets:981   GUAAGUCAUUCUAGCAUUUUUUAU   1004 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA	uncharacterized LOC107278415(LOC107278415)	coding protein	psRNATarget
AK288988.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||||||* targets:924   GUAAGUCAUUCUAGCAUUUUUCAC   947 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090086L17, full insert sequence	NA	coding protein	psRNATarget
XM_015759908.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||||||* targets:918   GUAAGUCAUUCUAGCAUUUUUCAC   941 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350124), mRNA	disease resistance protein RPM1(LOC4350124)	coding protein	psRNATarget
XM_015778842.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||||||||||||||||||||=* targets:1118   AUAAGUCAUUCUAGCAUUUUUCGC   1141 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA	putative RING-H2 finger protein ATL50(LOC4336763)	coding protein	psRNATarget
AK070352.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||||||* targets:415   GUAAGUCAUUCUAGCAUUUUUCAC   438 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence	NA	coding protein	psRNATarget
CT837577.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   *|||||||||=||||||||||||| targets:201   CUAAGUCAUUUUAGCAUUUUUCAU   224 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence	NA	coding protein	psRNATarget
XM_015756761.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||||||||||||||||||*||| targets:3348   AUAAGUCAUUCUAGCAUUUUCCAU   3371 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249)	coding protein	psRNATarget
XM_015793334.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||*|||||||||| targets:1730   AUAAGUCAUUCUAACAUUUUUCAU   1753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793335.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||*|||||||||| targets:1712   AUAAGUCAUUCUAACAUUUUUCAU   1735 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015793336.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||*|||||||||| targets:1559   AUAAGUCAUUCUAACAUUUUUCAU   1582 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA	transcription factor bHLH112(LOC9271688)	coding protein	psRNATarget
XM_015774602.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||*||||||||||||||||||| targets:1005   AUAAAUCAUUCUAGCAUUUUUCAU   1028 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA	protein app1(LOC4334321)	coding protein	psRNATarget
AK288502.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||||||||*|||| targets:561   AUAAGUCAUUCUAGCAUUUCUCAU   584 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
CT832752.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||*||||||||||||||||||| targets:942   AUAAAUCAUUCUAGCAUUUUUCAU   965 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence	NA	coding protein	psRNATarget
AK069119.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||*||||||||||||||||||| targets:974   AUAAAUCAUUCUAGCAUUUUUCAU   997 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence	NA	coding protein	psRNATarget
CT834553.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   ||||*||||||||||||||||||| targets:878   AUAAAUCAUUCUAGCAUUUUUCAU   901 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence	NA	coding protein	psRNATarget
XM_015767720.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||||||||*|||| targets:562   AUAAGUCAUUCUAGCAUUUCUCAU   585 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA	uncharacterized LOC4330679(LOC4330679)	coding protein	psRNATarget
AK107938.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   |||||||||||||||||||*|||| targets:532   AUAAGUCAUUCUAGCAUUUCUCAU   555 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015769984.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||*|||| targets:1533   GUAAGUCAUUCUAGCAUUUCUCAU   1556 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X2, mRNA	glutathionyl-hydroquinone reductase YqjG(LOC4329160)	coding protein	psRNATarget
XM_015769983.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||*|||| targets:1374   GUAAGUCAUUCUAGCAUUUCUCAU   1397 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X1, mRNA	glutathionyl-hydroquinone reductase YqjG(LOC4329160)	coding protein	psRNATarget
XM_015769985.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||*|||| targets:1272   GUAAGUCAUUCUAGCAUUUCUCAU   1295 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X3, mRNA	glutathionyl-hydroquinone reductase YqjG(LOC4329160)	coding protein	psRNATarget
AK105036.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||*|||| targets:276   GUAAGUCAUUCUAGCAUUUCUCAU   299 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-032-B07, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||=|||=||||||||||||* targets:2729   GUAAGUUAUUUUAGCAUUUUUCAC   2752 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
XM_015779859.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||||||=|||||||||*||| targets:923   GUAAGUCAUUUUAGCAUUUUCCAU   946 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA	formin-like protein 3(LOC4335722)	coding protein	psRNATarget
CT827898.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||*|||||=||||||||||||| targets:815   GUAAAUCAUUUUAGCAUUUUUCAU   838 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI019P11, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||||||||||||||||*||* targets:4280   GUAAGUCAUUCUAGCAUUUUCCAC   4303 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
AK120281.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =|||||||||||||||||||*||* targets:1046   GUAAGUCAUUCUAGCAUUUUCCAC   1069 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence	NA	coding protein	psRNATarget
AK288390.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||||||||||||||||*|||* targets:676   GUAAGUCAUUCUAGCAUUUCUCAC   699 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
XM_015783507.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   *||||||||||||*|||||||||* targets:812   CUAAGUCAUUCUAUCAUUUUUCAC   835 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA	ethylene-responsive transcription factor ERF014-like(LOC107277887)	coding protein	psRNATarget
AK288266.1	ncRNA:24   UAUUCAGUAAGAUCGUAAAAAGUA   1   =||||*|||||||||||||*|||| targets:1537   GUAAGCCAUUCUAGCAUUUCUCAU   1560 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence	NA	coding protein	psRNATarget