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BaseInfo

ncRNA ID	novel_osa_miR3609
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:23987732-23987956 [-]
Reference genome	IRGSP-1.0
Source	SRR2040392;SRR2857735
Length	24
Mature sequence(if miRNA)	1 - AUUAGAACGAUGUGACGAAAAAGU - 24
Stem-loop(if miRNA)	--                 UC                        A    A              --A     -   UCAAGGACUGCAACUACUAAAUGGACAACACUAGGUU   UUUUUCGUCAUAUCGUU  AAUUUCAAUCAAACUUCCAAUUUU GCGU AACUAAACACACCU   UAGAA CAU                                     U   |||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||   ||||| |||   AAAAAGCAGUGUAGCAA  UUAAAGUUGGUUUGAAGGUUAAAA CGCA UUGAUUUGUGUGGG   UAUAA CGU                                     G UG                 GA                        C    C              AUA     A   GUUAACGAGGUUGUAGUUAUUUUGUAUCAGAUGUUUA
Stem-loop sequence	UUUUUCGUCAUAUCGUUUCAAUUUCAAUCAAACUUCCAAUUUUAGCGUAAACUAAACACACCUAUAGAACAUUCAAGGACUGCAACUACUAAAUGGACAACACUAGGUUUGAUUUGUAGACUAUGUUUUAUUGAUGUUGGAGCAAUUGUGCAAAUAUAUAGGGUGUGUUUAGUUCACGCCAAAAUUGGAAGUUUGGUUGAAAUUAGAACGAUGUGACGAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109636.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   |||||||||||||||||||=|||| targets:940   ACUUUUUCGUCACAUCGUUUUAAU   963 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-138-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015764580.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*||||||||||||||||| targets:13   ACUUUUCCGUCACAUCGUUCUAAU   36 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC9272704), mRNA	receptor-like protein 12(LOC9272704)	coding protein	psRNATarget
XM_015775233.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||||*||||||||||||||| targets:393   ACUUUUUCAUCACAUCGUUCUAAU   416 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X5, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775232.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||||*||||||||||||||| targets:388   ACUUUUUCAUCACAUCGUUCUAAU   411 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X4, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
AK109584.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*||||||||||||||||| targets:690   ACUUUUCCGUCACAUCGUUCUAAU   713 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
AK106655.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*||||||||||||||||| targets:723   ACUUUUCCGUCACAUCGUUCUAAU   746 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence	NA	coding protein	psRNATarget
AK119368.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*||||||||||||=|||| targets:1176   ACUUUUCCGUCACAUCGUUUUAAU   1199 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-H06, full insert sequence	NA	coding protein	psRNATarget
AK288799.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:2032   ACUUUUCCGUCACAUCGUUCCAAU   2055 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|*||||||||||||||| targets:3212   ACUUUUCCAUCACAUCGUUCUAAU   3235 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288250.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:2843   ACUUUUCCGUCACAUCGUUCCAAU   2866 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015A01, full insert sequence	NA	coding protein	psRNATarget
XM_015758786.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:2390   ACUUUUCCGUCACAUCGUUCCAAU   2413 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA	uncharacterized LOC4348279(LOC4348279)	coding protein	psRNATarget
AK241616.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:795   ACUUUUCCGUCACAUCGUUCCAAU   818 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065186D23, full insert sequence	NA	coding protein	psRNATarget
AK102901.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:1790   ACUUUUCCGUCACAUCGUUCCAAU   1813 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033113C20, full insert sequence	NA	coding protein	psRNATarget
XM_015782830.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:285   ACUUUUCCGUCACAUCGUUCCAAU   308 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337693 (LOC4337693), mRNA	uncharacterized LOC4337693(LOC4337693)	coding protein	psRNATarget
AK106442.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||*|||||||||||||||*||| targets:895   ACUUCUUCGUCACAUCGUUCCAAU   918 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-103-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015791683.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||*|||||||||||||||||*||| targets:453   ACAUUUUCGUCACAUCGUUCCAAU   476 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324388 (LOC4324388), mRNA	uncharacterized LOC4324388(LOC4324388)	coding protein	psRNATarget
AK288889.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:253   ACUUUUCCGUCACAUCGUUCCAAU   276 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090080B10, full insert sequence	NA	coding protein	psRNATarget
XM_015767117.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:1155   ACUUUUCCGUCACAUCGUUCCAAU   1178 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266427 (LOC9266427), transcript variant X8, mRNA	uncharacterized LOC9266427(LOC9266427)	coding protein	psRNATarget
AK120351.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   ||||||*|*|=||||||||||||| targets:3133   ACUUUUCCAUUACAUCGUUCUAAU   3156 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013065M07, full insert sequence	NA	coding protein	psRNATarget
XM_015778471.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   |=||||||*|||||||||||*||| targets:3139   AUUUUUUCAUCACAUCGUUCCAAU   3162 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glycine-rich cell wall structural protein (LOC9267389), mRNA	glycine-rich cell wall structural protein(LOC9267389)	coding protein	psRNATarget
AK111010.1	ncRNA:24   UGAAAAAGCAGUGUAGCAAGAUUA   1   |*||||||*|=||||||||||||| targets:816   AAUUUUUCUUUACAUCGUUCUAAU   839 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-174-F09, full insert sequence	NA	coding protein	psRNATarget