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BaseInfo

ncRNA ID novel_osa_miR3607
Species Oryza sativa
Class miRNA
Genome position Chr12:24325959-24326037 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2857734;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - UCGCGAACGCGCAAAAGGAUUGCA - 24
Stem-loop(if miRNA) --UC               GA      GU         A
    GCGAACGCGCAAAAG  UUGCAC  CAAUAUAUU C
    |||||||||||||||  ||||||  ||||||||| A
    CGCUUGCGUGUUUUC  AACGUG  GUUAUAUAA A
AAAA               UC      UG         G
Stem-loop sequence UCGCGAACGCGCAAAAGGAUUGCACGUCAAUAUAUUACAAGAAUAUAUUGGUGUGCAACUCUUUUGUGCGUUCGCAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100491.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||||||||||||||||||||
targets:2690   UGCAAUCCUUUUGCGCGUUCGCGA   2713

0.0 Oryza sativa Japonica Group cDNA clone:J023098H12, full insert sequence NA coding protein psRNATarget
AK100648.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||||||||||||||||||||
targets:2256   UGCAAUCCUUUUGCGCGUUCGCGA   2279

0.0 Oryza sativa Japonica Group cDNA clone:J023110N05, full insert sequence NA coding protein psRNATarget
AK288782.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||=||||||||||||||=||
targets:4001   UGCAAUUCUUUUGCGCGUUCGUGA   4024

2.5 Oryza sativa Japonica Group cDNA, clone: J090069D21, full insert sequence NA coding protein psRNATarget
XM_015767774.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||=||||||=||||||||||
targets:1116   UGCAAUUCUUUUGUGCGUUCGCGA   1139

2.5 PREDICTED: Oryza sativa Japonica Group thioredoxin-like 3-1, chloroplastic (LOC4330886), mRNA thioredoxin-like 3-1, chloroplastic(LOC4330886) coding protein psRNATarget
AB780362.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  |||||||||||||||||||||*||
targets:2508   UGCAAUCCUUUUGCGCGUUCGAGA   2531

1.5 Oryza sativa Japonica Group GIANT EMBRYO (GE) mRNA for CYP78A13, complete cds, cultivar: Taichung 65 NA coding protein psRNATarget
XM_015792144.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||=|||=||||||||=||||||||
targets:292   UGUAAUUCUUUUGCGUGUUCGCGA   315

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 3 (LOC4343492), transcript variant X1, mRNA glucan endo-1,3-beta-glucosidase 3(LOC4343492) coding protein psRNATarget
AK071889.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||=|||=||||||||=||||||||
targets:217   UGUAAUUCUUUUGCGUGUUCGCGA   240

2.5 Oryza sativa Japonica Group cDNA clone:J013047P08, full insert sequence NA coding protein psRNATarget
AK098943.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||=|||=||||||||=||||||||
targets:217   UGUAAUUCUUUUGCGUGUUCGCGA   240

2.5 Oryza sativa Japonica Group cDNA clone:J013047P11, full insert sequence NA coding protein psRNATarget
XM_015778196.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||=|||*||||||||||||=
targets:318   UGCAAUUCUUGUGCGCGUUCGCGG   341

3.0 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 4.4 (LOC4335932), mRNA protein NRT1/ PTR FAMILY 4.4(LOC4335932) coding protein psRNATarget
AK064785.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||||||=|||*||||||||||||=
targets:84   UGCAAUUCUUGUGCGCGUUCGCGG   107

3.0 Oryza sativa Japonica Group cDNA clone:J013000B16, full insert sequence NA coding protein psRNATarget
AK107059.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  *||||||=||||||||||||*|||
targets:986   CGCAAUCUUUUUGCGCGUUCACGA   1009

2.5 Oryza sativa Japonica Group cDNA clone:002-121-D11, full insert sequence NA coding protein psRNATarget
XM_015779369.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  |||||||*|*||||||||||||||
targets:114   UGCAAUCGUAUUGCGCGUUCGCGA   137

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280645 (LOC107280645), mRNA uncharacterized LOC107280645(LOC107280645) coding protein psRNATarget
AK070013.1
ncRNA:24   ACGUUAGGAAAACGCGCAAGCGCU   1
  ||=||**|||||||||||||||||
targets:1134   UGUAAAGCUUUUGCGCGUUCGCGA   1157

2.0 Oryza sativa Japonica Group cDNA clone:J023039K05, full insert sequence NA coding protein psRNATarget
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