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BaseInfo

ncRNA ID	novel_osa_miR3604
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:17381049-17381198 [-]
Reference genome	IRGSP-1.0
Source	SRR2040392
Length	22
Mature sequence(if miRNA)	1 - AUCAAACGUUGGACAUAAAAAC - 22
Stem-loop(if miRNA)	--A                  C   CC       UU        ---A  UU         AUU    UUGUUAUUAG    UUUAUGUUUAACGUUUGA CGU  GUUUUAU  UGAAAAAA    AA  ACGAUUAGU   UUUG          A    |||||||||||||||||| |||  |||||||  ||||||||    ||  |||||||||   ||||    AAAUACAGGUUGCAAACU GCA  UAGAAUA  ACUUUUUU    UU  UGUUAAUCA   UGUG          U CAA                  A   AA       -C        AAUA  UU         --G    UAUUUCAUAG
Stem-loop sequence	AUUUAUGUUUAACGUUUGACCGUCCGUUUUAUUUUGAAAAAAAAAUUACGAUUAGUAUUUUUGUUGUUAUUAGAUGAUACUUUAUGUGUGACUAAUUGUUUUUAUAAUUUUUUCACAUAAGAUAAACGAUCAAACGUUGGACAUAAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760576.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   ||||*|=||||||||||||||| targets:1948   GUUUCUGUGUCCAACGUUUGAU   1969 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X1, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
XM_015760578.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   ||||*|=||||||||||||||| targets:1864   GUUUCUGUGUCCAACGUUUGAU   1885 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X3, mRNA	uncharacterized LOC9272430(LOC9272430)	coding protein	psRNATarget
AK288458.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   ||||*|||*||||||||||||| targets:1157   GUUUCUAUAUCCAACGUUUGAU   1178 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
XM_015759983.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   ||||**=||||||||||||||| targets:3514   GUUUCCGUGUCCAACGUUUGAU   3535 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA	uncharacterized LOC9270101(LOC9270101)	coding protein	psRNATarget
AK070212.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   ||||**|||||||||||||||* targets:1278   GUUUCCAUGUCCAACGUUUGAC   1299 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
AK242718.1	ncRNA:22   CAAAAAUACAGGUUGCAAACUA   1   *|*|||||*||||||||||||* targets:1871   CUGUUUAUAUCCAACGUUUGAC   1892 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090043O09, full insert sequence	NA	coding protein	psRNATarget