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BaseInfo

ncRNA ID	novel_osa_miR3602
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:18616703-18616775 [-]
Reference genome	IRGSP-1.0
Source	SRR2040392
Length	23
Mature sequence(if miRNA)	51 - AAGAGAUUUUGGUUGGAUGUGAC - 73
Stem-loop(if miRNA)	--   AG                  U    -G   UA   AAG  AUUUUGGUUGGAUGUGAC UAUC  AUU  U   |||  |||||||||||||||||| ||||  |||   UUC  UAAAACCAACCUAUACUG GUAG  UGA  U UA   CU                  U    GA   UG
Stem-loop sequence	AAGAGAUUUUGGUUGGAUGUGACUUAUCGAUUUAUUGUAGUAGGAUGUGUCAUAUCCAACCAAAAUUCCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835671.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   ||||=|||=|||||||||||||| targets:1177   GUCAUAUCUAACCAAAAUCUCUU   1199 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128D09, full insert sequence	NA	coding protein	psRNATarget
AK288762.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   *||||||||||=||||||||||| targets:789   UUCACAUCCAAUCAAAAUCUCUU   811 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
XM_015787746.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   |||||||||*||||||||||||| targets:2307   GUCACAUCCCACCAAAAUCUCUU   2329 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC4340709), mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC4340709)	coding protein	psRNATarget
AK288255.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   |||||||||||||||||||*||| targets:839   GUCACAUCCAACCAAAAUCACUU   861 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090015K18, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   |||||||||||||||||||*||| targets:1342   GUCACAUCCAACCAAAAUCCCUU   1364 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK242470.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   ||||=|||||*|||||||||||| targets:912   GUCAUAUCCAUCCAAAAUCUCUU   934 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080302H11, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   |||*||||||*|||||||||||| targets:6586   GUCUCAUCCAUCCAAAAUCUCUU   6608 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
AK288587.1	ncRNA:23   CAGUGUAGGUUGGUUUUAGAGAA   1   |||*=||||||||||||||*||| targets:2192   GUCUUAUCCAACCAAAAUCCCUU   2214 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090050A10, full insert sequence	NA	coding protein	psRNATarget