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BaseInfo

ncRNA ID	novel_osa_miR3600
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:25286268-25286388 [-]
Reference genome	IRGSP-1.0
Source	SRR2040392
Length	24
Mature sequence(if miRNA)	98 - AAAUUAUCACAAAACUGUAACUUU - 121
Stem-loop(if miRNA)	--         C                 AUUA       CUACAGUAUAUAUGUGCUGCU   AAAUUAUCA AAAACUGUAACUUUUAC    UAUACUG                     A   ||||||||| |||||||||||||||||    |||||||                     C   UUUAAUAGU UUUUGACAUUGAAAAUG    AUAUACG                     A CC         A                 --CA       ACGAUGUCAUAUAUCCAUAUG
Stem-loop sequence	AAAUUAUCACAAAACUGUAACUUUUACAUUAUAUACUGCUACAGUAUAUAUGUGCUGCUACAGUAUACCUAUAUACUGUAGCAGCAUAUAACGUAAAAGUUACAGUUUUAUGAUAAUUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100457.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   ||||||=||||||||||||||||| targets:2730   AAAGUUGCAGUUUUGUGAUAAUUU   2753 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023091I01, full insert sequence	NA	coding protein	psRNATarget
AK288562.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**|==|||||||||||||||| targets:3098   AAAUCUGUAGUUUUGUGAUAAUUU   3121 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence	NA	coding protein	psRNATarget
AK288562.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**|==|||||||||||||||| targets:4088   AAAUCUGUAGUUUUGUGAUAAUUU   4111 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence	NA	coding protein	psRNATarget
XM_015794057.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||*||==|||||||||||||||| targets:702   AAACUUGUAGUUUUGUGAUAAUUU   725 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282005 (LOC107282005), mRNA	uncharacterized LOC107282005(LOC107282005)	coding protein	psRNATarget
AK288881.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**|==|||||||||||||||| targets:745   AAAUCUGUAGUUUUGUGAUAAUUU   768 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence	NA	coding protein	psRNATarget
AK242615.1	ncRNA:24   UUUC--AAUGUCAAAACACUAUUAAA   1   ||||--||==||*||||||||||||| targets:1060   AAAGGUUUGUAGAUUUGUGAUAAUUU   1085 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090017C12, full insert sequence	NA	coding protein	psRNATarget
AK101649.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**|==|||||||||||||||| targets:2341   AAAUCUGUAGUUUUGUGAUAAUUU   2364 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033056H04, full insert sequence	NA	coding protein	psRNATarget
AK107253.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**||=||||||||||||=||| targets:974   AAAUAUAUAGUUUUGUGAUAGUUU   997 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-G05, full insert sequence	NA	coding protein	psRNATarget
AK242139.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   *||*|||=||||||*||||||||| targets:2286   CAAUUUAUAGUUUUAUGAUAAUUU   2309 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075150H11, full insert sequence	NA	coding protein	psRNATarget
XM_015761246.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   *||--|==|||||||||||||||| targets:1972   CAA--UGUAGUUUUGUGAUAAUUU   1993 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 72A14 (LOC4323921), mRNA	cytochrome P450 72A14(LOC4323921)	coding protein	psRNATarget
AK073238.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   *||--|==|||||||||||||||| targets:1938   CAA--UGUAGUUUUGUGAUAAUUU   1959 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033015M03, full insert sequence	NA	coding protein	psRNATarget
AK288971.1	ncRNA:24   UUUCAAUGUCAAAACACUAUUAAA   1   |||**||=|*|||||||||||||* targets:3446   AAAUCUAUAAUUUUGUGAUAAUUC   3469 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090085E12, full insert sequence	NA	coding protein	psRNATarget