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BaseInfo

ncRNA ID novel_osa_miR3599
Species Oryza sativa
Class miRNA
Genome position Chr7:27169870-27169948 [-]
Reference genome IRGSP-1.0
Source SRR2040392
Length 24
Mature sequence(if miRNA) 1 - AAAUGUUCCACCCAAUUCUAGAUU - 24
Stem-loop(if miRNA) --          AAUA             UACAACAAAU
  UUUAGAAUUG    GGAUAUUUCAUAG          C
  ||||||||||    |||||||||||||          U
  AGAUCUUAAC    CUUGUAAAGUAUC          G
UU          CCAC             UCACACACAG
Stem-loop sequence UUUAGAAUUGAAUAGGAUAUUUCAUAGUACAACAAAUCUGGACACACACUCUAUGAAAUGUUCCACCCAAUUCUAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT831561.1
ncRNA:24   UUAGAUCUUAACCCACCUUGUAAA   1
  *|||**|||||||*||||||||||
targets:833   UAUCGUGAAUUGGCUGGAACAUUU   856

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223A09, full insert sequence NA coding protein psRNATarget