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BaseInfo

ncRNA ID	novel_osa_miR3597
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:18977489-18977608 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097778;SRR2099436;SRR1556016;SRR4407955;SRR1556020;SRR1612404
Length	24
Mature sequence(if miRNA)	97 - AUGAAUGUGAACAAUGCUAGAAAG - 120
Stem-loop(if miRNA)	--                            --                       AU  AAU   UUCUAGCAUUGUUCACAUUCAUAUAUAU  UAAUGAAUCUAGACAUAUAUGUU  UG   C   ||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||   AAGAUCGUAACAAGUGUAAGUAUAUAUA  AUUACUUAGAUCUGUAUAUACAG  AC   U GA                            CA                       --  GGA
Stem-loop sequence	UUCUAGCAUUGUUCACAUUCAUAUAUAUUAAUGAAUCUAGACAUAUAUGUUAUUGAAUCUAGGCAGACAUAUAUGUCUAGAUUCAUUAACAUAUAUAUGAAUGUGAACAAUGCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015775404.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   =||||||||||||||||=|||||| targets:3335   UUUUCUAGCAUUGUUCAUAUUCAU   3358 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X1, mRNA	protein NETWORKED 1A(LOC4331702)	coding protein	psRNATarget
XM_015775405.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   =||||||||||||||||=|||||| targets:3335   UUUUCUAGCAUUGUUCAUAUUCAU   3358 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X2, mRNA	protein NETWORKED 1A(LOC4331702)	coding protein	psRNATarget
XM_015767211.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:4019   CUUUCUAGCAUUGUCCACAUUCAU   4042 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767214.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:3952   CUUUCUAGCAUUGUCCACAUUCAU   3975 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767212.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:3923   CUUUCUAGCAUUGUCCACAUUCAU   3946 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767217.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:3856   CUUUCUAGCAUUGUCCACAUUCAU   3879 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767215.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:3797   CUUUCUAGCAUUGUCCACAUUCAU   3820 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767218.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:3701   CUUUCUAGCAUUGUCCACAUUCAU   3724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
AK073522.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:2490   CUUUCUAGCAUUGUCCACAUUCAU   2513 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence	NA	coding protein	psRNATarget
XM_015764678.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:1606   CUUUCUAGCAUUGUCCACAUUCAU   1629 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
CT835628.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:1170   CUUUCUAGCAUUGUCCACAUUCAU   1193 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence	NA	coding protein	psRNATarget
CT836499.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||||||||||||*|||||||||| targets:477   CUUUCUAGCAUUGCUCACAUUCAU   500 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA014C07, full insert sequence	NA	coding protein	psRNATarget
XM_015790894.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||||||||||||*||||||||| targets:556   CUUUCUAGCAUUGUCCACAUUCAU   579 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA	uncharacterized LOC107276821(LOC107276821)	coding protein	psRNATarget
XM_015755177.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||||||*||||||*||||||||| targets:1754   CUUUCUACCAUUGUCCACAUUCAU   1777 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA	glutathione S-transferase T3(LOC4346703)	coding protein	psRNATarget
AK242012.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||||||*||||||*||||||||| targets:716   CUUUCUAUCAUUGUCCACAUUCAU   739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence	NA	coding protein	psRNATarget
AK070352.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |*||||||||||*||||||||||| targets:421   CAUUCUAGCAUUUUUCACAUUCAU   444 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence	NA	coding protein	psRNATarget
JB164407.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||*||||||||||*||||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236076.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||*||||||||||*||||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2985353	NA	coding protein	psRNATarget
HI403946.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |||*||||||||||*||||||||| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015769449.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   ||||=||*|||||*|||||||||| targets:86   CUUUUUAACAUUGCUCACAUUCAU   109 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF018-like (LOC107278604), mRNA	ethylene-responsive transcription factor ERF018-like(LOC107278604)	coding protein	psRNATarget
AK065951.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   =*||=|||||||*||||||||||| targets:2735   UAUUUUAGCAUUUUUCACAUUCAU   2758 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
AK287508.1	ncRNA:24   GAA-AGAUCGUAACAAGUGUAAGUA   1   |||-|=|||||*|||||||||||*| targets:1497   CUUGUUUAGCAAUGUUCACAUUCCU   1521 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J043037I06, full insert sequence	NA	coding protein	psRNATarget
XM_015778164.1	ncRNA:24   GAA-AGAUCGUAACAAGUGUAAGUA   1   |||-|=|||||*|||||||||||*| targets:1581   CUUGUUUAGCAAUGUUCACAUUCCU   1605 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cation transporter HKT4 (LOC9266695), transcript variant X1, mRNA	cation transporter HKT4(LOC9266695)	coding protein	psRNATarget
XM_015778165.1	ncRNA:24   GAA-AGAUCGUAACAAGUGUAAGUA   1   |||-|=|||||*|||||||||||*| targets:1470   CUUGUUUAGCAAUGUUCACAUUCCU   1494 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cation transporter HKT4 (LOC9266695), transcript variant X2, mRNA	cation transporter HKT4(LOC9266695)	coding protein	psRNATarget
AJ491816.1	ncRNA:24   GAA-AGAUCGUAACAAGUGUAAGUA   1   |||-|=|||||*|||||||||||*| targets:1388   CUUGUUUAGCAAUGUUCACAUUCCU   1412 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative sodium transporter (hkt4 gene)	NA	coding protein	psRNATarget
XM_015778167.1	ncRNA:24   GAA-AGAUCGUAACAAGUGUAAGUA   1   |||-|=|||||*|||||||||||*| targets:873   CUUGUUUAGCAAUGUUCACAUUCCU   897 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cation transporter HKT4 (LOC9266695), transcript variant X4, mRNA	cation transporter HKT4(LOC9266695)	coding protein	psRNATarget
XM_015765624.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |*||=||*||||*||||||||||| targets:1137   CAUUUUAACAUUUUUCACAUUCAU   1160 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324918), mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324918)	coding protein	psRNATarget
AK241345.1	ncRNA:24   GAAAGAUCGUAACAAGUGUAAGUA   1   |*||=||*||||*||||||||||| targets:1130   CAUUUUAACAUUUUUCACAUUCAU   1153 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065148C06, full insert sequence	NA	coding protein	psRNATarget