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BaseInfo

ncRNA ID	novel_osa_miR3596
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:14298869-14298952 [+]
Reference genome	IRGSP-1.0
Source	SRR2040392;SRR3234044;SRR3234045;SRR5049780;SRR1612403;SRR1612404
Length	21
Mature sequence(if miRNA)	64 - UUAAUAUGAAUAUGGGAAAUG - 84
Stem-loop(if miRNA)	--       C       A  UUC         C      GAU   UUUCUCA AUUUAUA UG   CUAAUGAAU UAGAUA   A   ||||||| ||||||| ||   ||||||||| ||||||   AAAGGGU UAAGUAU AU   GAUUACUUA AUUUGU   U GU       A       A  UAC         A      AUA
Stem-loop sequence	UUUCUCACAUUUAUAAUGUUCCUAAUGAAUCUAGAUAGAUAUAUAUGUUUAAAUUCAUUAGCAUUAAUAUGAAUAUGGGAAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070550.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   ||||||||||||||||||||| targets:2627   CAUUUCCCAUAUUCAUAUUAA   2647 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
AK241705.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||||=||||||||||||| targets:3991   CAUUUCCUAUAUUCAUAUUAA   4011 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK099623.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||||||||||||||||=| targets:96   CAUUUCCCAUAUUCAUAUUGA   116 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
AK288266.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   ||||||=||||||||||||=| targets:1551   CAUUUCUCAUAUUCAUAUUGA   1571 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence	NA	coding protein	psRNATarget
XM_015758389.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||||=|||||||||||=| targets:2137   CAUUUCCUAUAUUCAUAUUGA   2157 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC107276819)	coding protein	psRNATarget
XM_015795314.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   ||||||=||||||||||||=| targets:1752   CAUUUCUCAUAUUCAUAUUGA   1772 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA	cytochrome P450 89A2(LOC4344671)	coding protein	psRNATarget
CT837739.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   ||||||=||||||||||||=| targets:1389   CAUUUCUCAUAUUCAUAUUGA   1409 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048L02, full insert sequence	NA	coding protein	psRNATarget
CT833789.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   =|||||=|||||||||||||| targets:376   UAUUUCUCAUAUUCAUAUUAA   396 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence	NA	coding protein	psRNATarget
CT833788.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   =|||||=|||||||||||||| targets:377   UAUUUCUCAUAUUCAUAUUAA   397 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence	NA	coding protein	psRNATarget
AK289050.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |=||||=||||||||||||=| targets:2863   CGUUUCUCAUAUUCAUAUUGA   2883 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence	NA	coding protein	psRNATarget
AK288214.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||||||*||||||||||| targets:2621   CAUUUCCCACAUUCAUAUUAA   2641 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   =||||||=|||||||||||=| targets:2126   UAUUUCCUAUAUUCAUAUUGA   2146 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
CT837594.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||||||*||||||||||| targets:1297   CAUUUCCCACAUUCAUAUUAA   1317 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021M15, full insert sequence	NA	coding protein	psRNATarget
XM_015789040.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   *||||=|||||||||||||=| targets:4747   GAUUUUCCAUAUUCAUAUUGA   4767 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
AK121342.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   *||||=|||||||||||||=| targets:4581   GAUUUUCCAUAUUCAUAUUGA   4601 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
XM_015767758.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   =||||||||*||||||||||| targets:3760   UAUUUCCCACAUUCAUAUUAA   3780 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA	transcription factor bHLH68(LOC4325885)	coding protein	psRNATarget
XM_015773673.1	ncRNA:21   GUAAAGGGUAUAAGUAUAAUU   1   |||||=|||*||||||||||| targets:1778   CAUUUUCCACAUUCAUAUUAA   1798 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA	cytochrome P450 78A5(LOC4333404)	coding protein	psRNATarget