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BaseInfo

ncRNA ID	novel_osa_miR3594
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:12561162-12561277 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2099567;SRR1555751;SRR4407954;SRR4407957;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AAACAACCGGGACUAAAGAUGGAU - 24
Stem-loop(if miRNA)	--AAA                 G   --ACCAA    GACUA      AAU G  GU UA      CAACCGGGACUAAAGAU GAU       CUGG     AAAAAG   U GG  C  A      ||||||||||||||||| |||       ||||     ||||||   | ||  |      GUUGGCCCUGAUUUCUA UUA       GACC     UUUUUC   A CC  G  C UUGUG                 G   AAAUCAG    --AAG      AAU G  UG CU
Stem-loop sequence	AAACAACCGGGACUAAAGAUGGAUACCAACUGGGACUAAAAAAGAAUUGGGGUCUAACUCGGUCCGAUAACUUUUUGAACCAGGACUAAAAUUGAUCUUUAGUCCCGGUUGGUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288424.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |||=||=||||||||||||||||| targets:2286   AUCUAUUUUUAGUCCCGGUUGUUU   2309 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UAG--GUAGAAAUCAGGGCCAACAAA   1   =|=--=|||||||||||||||||||| targets:1417   GUUGGUAUCUUUAGUCCCGGUUGUUU   1442 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ||||*|=|||||||||||||*||| targets:2403   AUCCUUUUUUAGUCCCGGUUAUUU   2426 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   *|**|||||||||||||||||*|* targets:2360   CUAAAUCUUUAGUCCCGGUUGGUA   2383 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   *|=*|||||||||||||||||||| targets:1559   UUUGAUCUUUAGUCCCGGUUGUUU   1582 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |||-||||||||||||||||*||| targets:1445   AUC-AUCUUUAGUCCCGGUUCUUU   1467 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |||-||||||||||||||||*||| targets:1439   AUC-AUCUUUAGUCCCGGUUCUUU   1461 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288153.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |||-||||||||||||||||*||| targets:38   AUC-AUCUUUAGUCCCGGUUCUUU   60 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |**=|||||||||||||||||||* targets:2235   AGAUAUCUUUAGUCCCGGUUGUUG   2258 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |**=|||||||*|||||||||||* targets:2305   AGAUAUCUUUACUCCCGGUUGUUC   2328 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |||*|||||||||||||||||*|* targets:1827   AUCGAUCUUUAGUCCCGGUUGGUG   1850 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   *|**|||||||||||||||||*|* targets:1902   CUAAAUCUUUAGUCCCGGUUGGUA   1925 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UAGG-UAGAAAUCAGGGCCAACAAA   1   ||==-|||||||||||||||||*|* targets:43   AUUUGAUCUUUAGUCCCGGUUGGUA   67 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ***=||||||||||||||||*||| targets:1872   CGGUAUCUUUAGUCCCGGUUAUUU   1895 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ****|||||||||||||||||*|* targets:1257   UCGGAUCUUUAGUCCCGGUUGAUA   1280 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ||**||||||||||||||||*||| targets:640   AUGGAUCUUUAGUCCCGGUUAUUU   663 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   =***|||||||||||||||||*|* targets:552   GAGGAUCUUUAGUCCCGGUUGGUG   575 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ||**|||||||||||||||||*|* targets:144   AUAGAUCUUUAGUCCCGGUUGGUG   167 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ||**|||||||||||||||||*|* targets:235   AUAGAUCUUUAGUCCCGGUUGGUA   258 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   ||=-|||||||||||||||||*|* targets:1372   AUU-AUCUUUAGUCCCGGUUGGUA   1394 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288377.1	ncRNA:24   UA--GGUAGAAAUCAGGGCCAACAAA   1   ||--|*|||||||||||||||||*|* targets:1371   AUAGCGAUCUUUAGUCCCGGUUGGUG   1396 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   *|=*|||||||||||||||||*|* targets:926   UUUAAUCUUUAGUCCCGGUUGGUA   949 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288544.1	ncRNA:24   UA--GG----UAGAAAUCAGGGCCAACAAA   1   ||--||----|||||||||||||||||*|* targets:1780   AUAGCCCUAGAUCUUUAGUCCCGGUUGAUG   1809 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   |***|||||||*|||||||||||* targets:1854   AGAAAUCUUUACUCCCGGUUGUUC   1877 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   =***|||||||||||||||||*|* targets:1697   GAGGAUCUUUAGUCCCGGUUGGUA   1720 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288598.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   **|*|||||||||||||||||*|* targets:967   UACGAUCUUUAGUCCCGGUUGGUG   990 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   =*|*|||||||||||||||||*|* targets:1905   GACGAUCUUUAGUCCCGGUUGGUA   1928 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   UAGGUAGAAAUCAGGGCCAACAAA   1   =***|||||||||||||||||*|* targets:67   GAGGAUCUUUAGUCCCGGUUGAUG   90 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget