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BaseInfo

ncRNA ID novel_osa_miR3593
Species Oryza sativa
Class miRNA
Genome position Chr6:10428934-10429018 [-]
Reference genome IRGSP-1.0
Source SRR2040392
Length 21
Mature sequence(if miRNA) 65 - UGACGGGCUGUAGUUUAGGCC - 85
Stem-loop(if miRNA) --                       UCACU    UGUG  AU
  UGACGGGCUGUAGUUUAGGCCCG     GAUA    UC  C
  |||||||||||||||||||||||     ||||    ||  U
  ACUGCCCGGCAUCAAAUCCGGGU     CUAU    AG  A
UC                       UAACU    UGUA  GU
Stem-loop sequence UGACGGGCUGUAGUUUAGGCCCGUCACUGAUAUGUGUCAUCUAUGGAAUGUUAUCUCAAUUGGGCCUAAACUACGGCCCGUCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015779200.1
ncRNA:21   CCGGAUUUGAUGUCGGGCAGU   1
  ||||||||||||=||||||||
targets:59   GGCCUAAACUACGGCCCGUCA   79

1.5 PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IX.1-like (LOC107276703), mRNA L-type lectin-domain containing receptor kinase IX.1-like(LOC107276703) coding protein psRNATarget