Search result

BaseInfo

ncRNA ID	novel_osa_miR3592
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:20665987-20666053 [-]
Reference genome	IRGSP-1.0
Source	SRR2040392
Length	21
Mature sequence(if miRNA)	47 - AAAACCGGAUAGGAUGACUCC - 67
Stem-loop(if miRNA)	--       ----------   AGGAUGACUCCCCGAA   AAAACCG          GAU                C   |||||||          |||                U   UUUUGGC          GUU                A GG       GAUUUUCUCA   UAACACAACCAAAGUU
Stem-loop sequence	AAAACCGGAUAGGAUGACUCCCCGAACUAUUGAAACCAACACAAUUUGACUCUUUUAGCGGUUUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015777925.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   ||||||=|||||||||||||| targets:10   GGAGUCGUCCUAUCCGGUUUU   30 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription factor RF2a-like (LOC4336273), mRNA	transcription factor RF2a-like(LOC4336273)	coding protein	psRNATarget
AK242704.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   |||||==|||||||||||||| targets:1126   GGAGUUGUCCUAUCCGGUUUU   1146 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090039M02, full insert sequence	NA	coding protein	psRNATarget
XM_015763946.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   ||||||=|=|||||||||||| targets:1221   GGAGUCGUUCUAUCCGGUUUU   1241 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable serine/threonine-protein kinase At1g54610 (LOC107279713), mRNA	probable serine/threonine-protein kinase At1g54610(LOC107279713)	coding protein	psRNATarget
XM_015773939.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   *|||||||||||||=|||||| targets:1877   AGAGUCAUCCUAUCUGGUUUU   1897 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable isoaspartyl peptidase/L-asparaginase 2 (LOC107280261), mRNA	probable isoaspartyl peptidase/L-asparaginase 2(LOC107280261)	coding protein	psRNATarget
XM_015768563.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   ||||||=|||||*|||||||| targets:225   GGAGUCGUCCUACCCGGUUUU   245 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group galactoside 2-alpha-L-fucosyltransferase (LOC4330826), mRNA	galactoside 2-alpha-L-fucosyltransferase(LOC4330826)	coding protein	psRNATarget
XM_015787378.1	ncRNA:21   CCUCAGUAGGAUAGGCCAAAA   1   **||*||||||||||||||*| targets:3194   CAAGGCAUCCUAUCCGGUUGU   3214 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-processing-splicing factor 8 (LOC4340248), mRNA	pre-mRNA-processing-splicing factor 8(LOC4340248)	coding protein	psRNATarget