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BaseInfo

ncRNA ID	novel_osa_miR3588
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:9966721-9966846 [+]
Reference genome	IRGSP-1.0
Source	SRR2040392
Length	21
Mature sequence(if miRNA)	106 - AUUUUUCGAUCCAACGGCAGU - 126
Stem-loop(if miRNA)	--UAA                   C                  AC    GAAUAAAACC        A      UGUUGGAUCGAAAAAUGGA GUCUGAGAUUCGUUCACG  UCGU          GUGAGUAA A      ||||||||||||||||||| ||||||||||||||||||  ||||          |||||||| U      GCAACCUAGCUUUUUACCU CAGGCUCUAAGCAGGUGU  AGUA          UACUCAUU U UGACG                   A                  --    ---------A        U
Stem-loop sequence	UAAUGUUGGAUCGAAAAAUGGACGUCUGAGAUUCGUUCACGACUCGUGAAUAAAACCGUGAGUAAAAUUUUUACUCAUAAUGAUGUGGACGAAUCUCGGACAUCCAUUUUUCGAUCCAACGGCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763997.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   |||*||||||||||||=|||| targets:815   ACUACCGUUGGAUCGAGAAAU   835 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chitinase-like protein 2 (LOC107279727), mRNA	chitinase-like protein 2(LOC107279727)	coding protein	psRNATarget
XM_015792283.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   |||*==||||||||||||||| targets:1088   ACUAUUGUUGGAUCGAAAAAU   1108 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group momilactone A synthase-like (LOC4344208), transcript variant X1, mRNA	momilactone A synthase-like(LOC4344208)	coding protein	psRNATarget
XM_015792284.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   |||*==||||||||||||||| targets:1097   ACUAUUGUUGGAUCGAAAAAU   1117 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group momilactone A synthase-like (LOC4344208), transcript variant X2, mRNA	momilactone A synthase-like(LOC4344208)	coding protein	psRNATarget
XM_015789578.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   |||**=||||||||||||||| targets:1787   ACUAAUGUUGGAUCGAAAAAU   1807 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein SRC2 (LOC9270916), mRNA	protein SRC2(LOC9270916)	coding protein	psRNATarget
AK103436.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   =*||||*||||||||||*||| targets:1231   GGUGCCAUUGGAUCGAACAAU   1251 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033129C03, full insert sequence	NA	coding protein	psRNATarget
XM_015760084.1	ncRNA:21   UGACGGCAACCUAGCUUUUUA   1   =*||||*||||||||||*||| targets:1234   GGUGCCAUUGGAUCGAACAAU   1254 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350405 (LOC4350405), mRNA	uncharacterized LOC4350405(LOC4350405)	coding protein	psRNATarget