Search result

BaseInfo

ncRNA ID novel_osa_miR3571
Species Oryza sativa
Class miRNA
Genome position Chr12:23468064-23468239 [-]
Reference genome IRGSP-1.0
Source SRR2040392;SRR2040395;SRR2040398;SRR2040403;SRR2040408;SRR2040409;SRR2857734;SRR2857735;SRR3123630;SRR1738225
Length 24
Mature sequence(if miRNA) 1 - GUCAAACGUUGGACACGGAAACCU - 24
Stem-loop(if miRNA) --     UU                         ----------------------A   ---   UUUUUUUUUAUAAUUAGUACUUUCGUUGUUGUUA
  GUUUU  UGUCUAACGUUUGAUUGUUCGUCUU                       UAU   GAA                                  G
  |||||  |||||||||||||||||||||||||                       |||   |||                                  A
  CAAAG  ACAGGUUGCAAACUGGCAGGCAGAA                       AAU   UCU                                  U
UC     GC                         CAAACUUUUUUAAUACUUUUUUA   UUU   AUUCAGUGUGUACUCCAUAAUUAGUACAAAAUAG
Stem-loop sequence GUUUUUUUGUCUAACGUUUGAUUGUUCGUCUUAUAUGAAUUUUUUUUUAUAAUUAGUACUUUCGUUGUUGUUAGAUGAUAAAACAUGAUUAAUACCUCAUGUGUGACUUAUCUUUUUAAAUUUUUUCAUAAUUUUUUCAAACAAGACGGACGGUCAAACGUUGGACACGGAAACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT832630.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =|||||||||||||||||||||||
targets:335   GGGUUUCCGUGUCCAACGUUUGAC   358

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence NA coding protein psRNATarget
CT832631.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =|||||||||||||||||||||||
targets:335   GGGUUUCCGUGUCCAACGUUUGAC   358

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence NA coding protein psRNATarget
XM_015760578.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  |||||||=|||||||||||||||=
targets:1862   AGGUUUCUGUGUCCAACGUUUGAU   1885

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X3, mRNA uncharacterized LOC9272430(LOC9272430) coding protein psRNATarget
XM_015760576.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  |||||||=|||||||||||||||=
targets:1946   AGGUUUCUGUGUCCAACGUUUGAU   1969

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272430 (LOC9272430), transcript variant X1, mRNA uncharacterized LOC9272430(LOC9272430) coding protein psRNATarget
XM_015759983.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =||||||||||||||||||||||=
targets:3512   GGGUUUCCGUGUCCAACGUUUGAU   3535

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270101 (LOC9270101), transcript variant X4, mRNA uncharacterized LOC9270101(LOC9270101) coding protein psRNATarget
XM_015784718.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||||||||||||||=|||||||
targets:1384   UGGUUUCCGUGUCCAAUGUUUGAC   1407

1.5 PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA basic 7S globulin(LOC4326528) coding protein psRNATarget
AK288606.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  |||||||||||||||||||||*||
targets:2343   AGGUUUCCGUGUCCAACGUUUUAC   2366

1.5 Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence NA coding protein psRNATarget
XM_015792473.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =*||||||||||||||||||||||
targets:2587   GAGUUUCCGUGUCCAACGUUUGAC   2610

0.0 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
XM_015792475.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =*||||||||||||||||||||||
targets:2601   GAGUUUCCGUGUCCAACGUUUGAC   2624

0.0 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
AK242553.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *||||||||||*||||||||||||
targets:175   UGGUUUCCGUGCCCAACGUUUGAC   198

1.5 Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence NA coding protein psRNATarget
AK103707.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||*|||||||||||||||||||
targets:1190   UGGUCUCCGUGUCCAACGUUUGAC   1213

0.0 Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence NA coding protein psRNATarget
AB051108.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||*|||||||||||||||||||
targets:1180   UGGUCUCCGUGUCCAACGUUUGAC   1203

0.0 Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds NA coding protein psRNATarget
AK287584.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||*|||||||||||||||||||
targets:1185   UGGUCUCCGUGUCCAACGUUUGAC   1208

0.0 Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence NA coding protein psRNATarget
XM_015771325.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||*|||||||||||||||||||
targets:1208   UGGUCUCCGUGUCCAACGUUUGAC   1231

0.0 PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA protein synthesis inhibitor I(LOC4324068) coding protein psRNATarget
AK288529.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *||*||||||||||||||||||||
targets:67   UGGCUUCCGUGUCCAACGUUUGAC   90

0.0 Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence NA coding protein psRNATarget
LQ235925.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  ||*|||=|||||=|||||||||||
targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29

2.5 Sequence 1920 from Patent EP2985353 NA coding protein psRNATarget
JB164256.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  ||*|||=|||||=|||||||||||
targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29

2.5 Sequence 1920 from Patent EP2559767 NA coding protein psRNATarget
HI403795.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  ||*|||=|||||=|||||||||||
targets:6   AGAUUUUCGUGUUCAACGUUUGAC   29

2.5 Sequence 1920 from Patent EP2074227 NA coding protein psRNATarget
AK242028.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =||||*|||||||=||||||||||
targets:1470   GGGUUGCCGUGUCUAACGUUUGAC   1493

2.5 Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence NA coding protein psRNATarget
XM_015776706.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =||||*|||||||=||||||||||
targets:1581   GGGUUGCCGUGUCUAACGUUUGAC   1604

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776705.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =||||*|||||||=||||||||||
targets:1587   GGGUUGCCGUGUCUAACGUUUGAC   1610

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776704.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =||||*|||||||=||||||||||
targets:1593   GGGUUGCCGUGUCUAACGUUUGAC   1616

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015772621.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  ***|||||||||||||||||||||
targets:399   UAAUUUCCGUGUCCAACGUUUGAC   422

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA uncharacterized LOC4332894(LOC4332894) coding protein psRNATarget
AK108063.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|||||=||||*||||||||||||
targets:1342   UGGUUUUCGUGCCCAACGUUUGAC   1365

2.5 Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence NA coding protein psRNATarget
CT828091.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  ***||||||||||=||||||||||
targets:1566   UAAUUUCCGUGUCUAACGUUUGAC   1589

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence NA coding protein psRNATarget
AK070212.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  |*||||||*|||||||||||||||
targets:1276   AAGUUUCCAUGUCCAACGUUUGAC   1299

1.0 Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence NA coding protein psRNATarget
AK109737.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =*|||||||||||||||*||||||
targets:1973   GAGUUUCCGUGUCCAACAUUUGAC   1996

1.5 Oryza sativa Japonica Group cDNA clone:002-146-C11, full insert sequence NA coding protein psRNATarget
CT827991.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|*||||||||||||||*||||||
targets:649   UGAUUUCCGUGUCCAACAUUUGAC   672

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence NA coding protein psRNATarget
AK106724.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  *|*||||||||||||||*||||||
targets:662   UGAUUUCCGUGUCCAACAUUUGAC   685

1.5 Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence NA coding protein psRNATarget
AK288811.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =****||||||||=||||||||||
targets:201   GAAAAUCCGUGUCUAACGUUUGAC   224

1.5 Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence NA coding protein psRNATarget
AK109598.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  |||***||||||||=|||||||||
targets:1650   AGGGAACCGUGUCCGACGUUUGAC   1673

2.5 Oryza sativa Japonica Group cDNA clone:002-137-D09, full insert sequence NA coding protein psRNATarget
AK289090.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =|||||*|*|*|||||||||||||
targets:844   GGGUUUACAUAUCCAACGUUUGAC   867

3.0 Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence NA coding protein psRNATarget
AK120358.1
ncRNA:24   UCCAAAGGCACAGGUUGCAAACUG   1
  =|***||||||||||||*||||||
targets:1058   GGAAAUCCGUGUCCAACAUUUGAC   1081

1.5 Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.