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BaseInfo

ncRNA ID	novel_osa_miR3570
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:16345703-16345777 [+]
Reference genome	IRGSP-1.0
Source	SRR2040392;SRR2098822;SRR2098823
Length	24
Mature sequence(if miRNA)	52 - UUUUUACUCGUGAUGACGUGGACA - 75
Stem-loop(if miRNA)	--         C    -      U   A    -AU  G   UCCACGUCA CAUG GUAAAA UUU ACUC   GA U   ||||||||| |||| |||||| ||| ||||   || A   AGGUGCAGU GUGC CAUUUU GAA UGAG   CU A AC         A    U      U   A    CGU  A
Stem-loop sequence	UCCACGUCACCAUGGUAAAAUUUUAACUCAUGAGUAAAUCUGCGAGUAAAGUUUUUACUCGUGAUGACGUGGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835866.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||=|||||||||||||||||||| targets:202   UGUUCACGUCAUCACGAGUAAAAA   225 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
AK243022.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||=|||||||||||||||||||| targets:1333   UGUUCACGUCAUCACGAGUAAAAA   1356 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100001E20, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||=|||||||||||||||||||| targets:1497   UGUUCACGUCAUCACGAGUAAAAA   1520 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
XM_015790977.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   ||||||=||||||||||||||||= targets:3282   UGUCCAUGUCAUCACGAGUAAAAG   3305 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X3, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
XM_015790976.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   ||||||=||||||||||||||||= targets:3629   UGUCCAUGUCAUCACGAGUAAAAG   3652 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X2, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
HI404362.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||*|||||||| targets:18   UGUCCACGUCAUCACAAGUAAAAA   41 Target Full Sequence	1.5	Sequence 2487 from Patent EP2074227	NA	coding protein	psRNATarget
JB164823.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||*|||||||| targets:18   UGUCCACGUCAUCACAAGUAAAAA   41 Target Full Sequence	1.5	Sequence 2487 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236492.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||*|||||||| targets:18   UGUCCACGUCAUCACAAGUAAAAA   41 Target Full Sequence	1.5	Sequence 2487 from Patent EP2985353	NA	coding protein	psRNATarget
HI404532.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||||||*|||| targets:3   UGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2657 from Patent EP2074227	NA	coding protein	psRNATarget
JB164993.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||||||*|||| targets:3   UGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2657 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236662.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   |||||||||||||||||||*|||| targets:3   UGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2657 from Patent EP2985353	NA	coding protein	psRNATarget
JB164648.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||||||||||||||||||*|||| targets:3   CGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2312 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236317.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||||||||||||||||||*|||| targets:3   CGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2312 from Patent EP2985353	NA	coding protein	psRNATarget
HI404187.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||||||||||||||||||*|||| targets:3   CGUCCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2312 from Patent EP2074227	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **|=||=||||||||||||||||| targets:5436   CAUUCAUGUCAUCACGAGUAAAAA   5459 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
HI404145.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *|||||=||||||||||||*|||| targets:3   CGUCCAUGUCAUCACGAGUUAAAA   26 Target Full Sequence	2.5	Sequence 2270 from Patent EP2074227	NA	coding protein	psRNATarget
JB164606.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *|||||=||||||||||||*|||| targets:3   CGUCCAUGUCAUCACGAGUUAAAA   26 Target Full Sequence	2.5	Sequence 2270 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236275.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *|||||=||||||||||||*|||| targets:3   CGUCCAUGUCAUCACGAGUUAAAA   26 Target Full Sequence	2.5	Sequence 2270 from Patent EP2985353	NA	coding protein	psRNATarget
JB164719.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:3   CGUUCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2383 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236388.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:3   CGUUCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2383 from Patent EP2985353	NA	coding protein	psRNATarget
HI404258.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:3   CGUUCACGUCAUCACGAGUUAAAA   26 Target Full Sequence	1.5	Sequence 2383 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236387.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:69   CGUUCACGUCAUCACGAGUUAAAA   92 Target Full Sequence	1.5	Sequence 2382 from Patent EP2985353	NA	coding protein	psRNATarget
HI404257.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:69   CGUUCACGUCAUCACGAGUUAAAA   92 Target Full Sequence	1.5	Sequence 2382 from Patent EP2074227	NA	coding protein	psRNATarget
JB164718.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   *||=|||||||||||||||*|||| targets:69   CGUUCACGUCAUCACGAGUUAAAA   92 Target Full Sequence	1.5	Sequence 2382 from Patent EP2559767	NA	coding protein	psRNATarget
HI404302.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **||*||||||||||||||||||| targets:20   CAUCAACGUCAUCACGAGUAAAAA   43 Target Full Sequence	0.0	Sequence 2427 from Patent EP2074227	NA	coding protein	psRNATarget
JB164763.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **||*||||||||||||||||||| targets:20   CAUCAACGUCAUCACGAGUAAAAA   43 Target Full Sequence	0.0	Sequence 2427 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236432.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **||*||||||||||||||||||| targets:20   CAUCAACGUCAUCACGAGUAAAAA   43 Target Full Sequence	0.0	Sequence 2427 from Patent EP2985353	NA	coding protein	psRNATarget
AK288313.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **|||||||||||||*|||||||| targets:3575   CAUCCACGUCAUCACAAGUAAAAA   3598 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   ACAGGUGCAGUAGUGCUCAUUUUU   1   **|*||||*|||||||=||||||| targets:705   GAUACACGACAUCACGGGUAAAAA   728 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget