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BaseInfo

ncRNA ID novel_osa_miR3566
Species Oryza sativa
Class miRNA
Genome position Chr11:13702246-13702344 [-]
Reference genome IRGSP-1.0
Source SRR2040391
Length 24
Mature sequence(if miRNA) 76 - GACACUUAUCUGUGACGGGCCAUA - 99
Stem-loop(if miRNA) --    C    C          CAUAA   A               A  
  GACA UUAU UGUGACGGGC     UUG GGCCCGAUUGAGAUG GGG
  |||| |||| ||||||||||     ||| ||||||||||||||| ||U
  CUGU AGUA ACACUGCCCG     AAU CCGGGUUAACUCUAU CCU
UA    C    A          AAGAA   C               A  
Stem-loop sequence GACACUUAUCUGUGACGGGCCAUAAUUGAGGCCCGAUUGAGAUGAGGGUUCCAUAUCUCAAUUGGGCCCUAAAAGAAGCCCGUCACAAAUGACUGUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288447.1
ncRNA:24   AUACCGGGCAGUGUCUAUUCACAG   1
  |***|||||||||||||=||||||
targets:560   UCGAGCCCGUCACAGAUGAGUGUC   583

1.5 Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence NA coding protein psRNATarget