ncRNA ID | novel_osa_miR3565 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr10:18221529-18221622 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1555747;SRR1556020 |
Length | 24 |
Mature sequence(if miRNA) | 71 - AAAUUUGACAUAUCUUAGGACUAC - 94 |
Stem-loop(if miRNA) |
--AAAUU   C        G    ----AC    CUACAAAUUUAACAU        UGA AUAUCUUA GACU      GAAU               A        ||| |||||||| ||||      ||||        ACU UAUAGAAU UUGA      GAUC               U UGUAUAC   A        A    AAGACA    UAAGCAUCAAGAUUC |
Stem-loop sequence | AAAUUUGACAUAUCUUAGGACUACGAAUCUACAAAUUUAACAUAUCUUAGAACUACGAAUCUAGACAGAAAGUUAUAAGAUAUAUCACAUAUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015774401.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group probable histone H2A.5 (LOC4324481), mRNA | probable histone H2A.5(LOC4324481) | coding protein | psRNATarget | |||||||||
AK062760.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:001-106-G12, full insert sequence | NA | coding protein | psRNATarget |