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BaseInfo

ncRNA ID novel_osa_miR3565
Species Oryza sativa
Class miRNA
Genome position Chr10:18221529-18221622 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 71 - AAAUUUGACAUAUCUUAGGACUAC - 94
Stem-loop(if miRNA) --AAAUU   C        G    ----AC    CUACAAAUUUAACAU
       UGA AUAUCUUA GACU      GAAU               A
       ||| |||||||| ||||      ||||
       ACU UAUAGAAU UUGA      GAUC               U
UGUAUAC   A        A    AAGACA    UAAGCAUCAAGAUUC
Stem-loop sequence AAAUUUGACAUAUCUUAGGACUACGAAUCUACAAAUUUAACAUAUCUUAGAACUACGAAUCUAGACAGAAAGUUAUAAGAUAUAUCACAUAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015774401.1
ncRNA:24   CAUCAGGAUUCUAUACAGUUUAAA   1
  *||**=|||||||||||=||||||
targets:699   AUAAAUCUAAGAUAUGUUAAAUUU   722

2.5 PREDICTED: Oryza sativa Japonica Group probable histone H2A.5 (LOC4324481), mRNA probable histone H2A.5(LOC4324481) coding protein psRNATarget
AK062760.1
ncRNA:24   CAUCAGGAUUCUAUACAGUUUAAA   1
  *||-|=||=|*|||||||||||||
targets:386   AUA-UUCUGAUAUAUGUCAAAUUU   408

3.0 Oryza sativa Japonica Group cDNA clone:001-106-G12, full insert sequence NA coding protein psRNATarget