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BaseInfo

ncRNA ID	novel_osa_miR3562
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:1853158-1853257 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097778;SRR2098557;SRR2098560;SRR2099567;SRR2099745;SRR2099746;SRR2458631;SRR4407779;SRR4407957;SRR4407959;SRR4407961;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AUGAAUACGGGCAAUGCUAGAAAG - 24
Stem-loop(if miRNA)	--              AC         G                   CAC   UUCUAGCAUUGCCU  AUUCAUAUA AUGUUAAUGAAUCUAGACA   A   ||||||||||||||  ||||||||| |||||||||||||||||||   AAGAUCGUAACGGG  UAAGUAUAU UACAAUUACUUAGAUCUGU   U GA              CA         A                   AUA
Stem-loop sequence	UUCUAGCAUUGCCUACAUUCAUAUAGAUGUUAAUGAAUCUAGACACACAUAUAUGUCUAGAUUCAUUAACAUAUAUAUGAAUACGGGCAAUGCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |||||||||||||||||*|||||| targets:766   CUUUCUAGCAUUGCCCGCAUUCAU   789 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK065487.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |||||||*||||||=||||||||| targets:2208   CUUUCUAACAUUGCUCGUAUUCAU   2231 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013003I22, full insert sequence	NA	coding protein	psRNATarget
XM_015787637.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |||||||*||||||=||||||||| targets:476   CUUUCUAACAUUGCUCGUAUUCAU   499 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278318 (LOC107278318), transcript variant X1, mRNA	uncharacterized LOC107278318(LOC107278318)	coding protein	psRNATarget
AK059715.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |||||||*||||||||*||||||| targets:34   CUUUCUAACAUUGCCCAUAUUCAU   57 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
AK102104.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |*||||||=|||*||||||||||| targets:644   CAUUCUAGUAUUUCCCGUAUUCAU   667 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033084B10, full insert sequence	NA	coding protein	psRNATarget
AK067404.1	ncRNA:24   GAAAGAUCGUAACGGGCAUAAGUA   1   |*||||||=|||*||||||||||| targets:642   CAUUCUAGUAUUUCCCGUAUUCAU   665 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013106F19, full insert sequence	NA	coding protein	psRNATarget
AK288961.1	ncRNA:24   GAAA---GAUCGUAACGGGCAUAAGUA   1   |*||---=|=|||||||||*||||||| targets:1465   CAUUACAUUGGCAUUGCCCAUAUUCAU   1491 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence	NA	coding protein	psRNATarget