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BaseInfo

ncRNA ID novel_osa_miR3560
Species Oryza sativa
Class miRNA
Genome position Chr9:19438816-19438861 [-]
Reference genome IRGSP-1.0
Source SRR2040391;SRR2040392
Length 20
Mature sequence(if miRNA) 1 - UUUAUUUGUAUUGUUUGACC - 20
Stem-loop(if miRNA) --  C           G  UUUU
  UC AAUAAUAUAAG GA    G
  || ||||||||||| ||
  AG UUGUUAUGUUU UU    A
CC  U           A  UUUA
Stem-loop sequence UCCAAUAAUAUAAGGGAUUUUGAAUUUUUAUUUGUAUUGUUUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK109584.1
ncRNA:20   CCAGUUUGUUAUGUUUAUUU   1
  |||||||||*||||||||||
targets:1116   GGUCAAACAUUACAAAUAAA   1135

1.5 Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence NA coding protein psRNATarget
AK288977.1
ncRNA:20   CCAGUUUGUUAUGUUUAUUU   1
  ||||||||||||||||*|||
targets:1829   GGUCAAACAAUACAAACAAA   1848

1.5 Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence NA coding protein psRNATarget