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BaseInfo

ncRNA ID	novel_osa_miR3559
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:3547454-3547501 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555751;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - GUAUGGAGUAUUAAAUGUAGGCAG - 24
Stem-loop(if miRNA)	--   -     G    -       A   GCC ACAUU AAUG UUUAUGC U   ||| ||||| |||| |||||||   CGG UGUAA UUAU AGGUAUG A GA   A     A    G       U
Stem-loop sequence	GCCACAUUGAAUGUUUAUGCAUAUGUAUGGAGUAUUAAAUGUAGGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288660.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =*|||||=|||||||||||||||| targets:2476   UAGCCUAUAUUUAAUACUCCAUAC   2499 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
AK288279.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   |||=|*|||||||||=|||||||| targets:5752   CUGUCCACAUUUAAUGCUCCAUAC   5775 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence	NA	coding protein	psRNATarget
XM_015761890.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =||=|*|||||||||||||=|||| targets:58   UUGUCCACAUUUAAUACUCUAUAC   81 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X1, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761891.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =||=|*|||||||||||||=|||| targets:58   UUGUCCACAUUUAAUACUCUAUAC   81 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X2, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761894.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =||=|*|||||||||||||=|||| targets:58   UUGUCCACAUUUAAUACUCUAUAC   81 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X5, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
XM_015761897.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =||=|*|||||||||||||=|||| targets:58   UUGUCCACAUUUAAUACUCUAUAC   81 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350929 (LOC4350929), transcript variant X7, mRNA	uncharacterized LOC4350929(LOC4350929)	coding protein	psRNATarget
AK105537.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =|*|||||||||||||||||||== targets:738   UUUCCUACAUUUAAUACUCCAUGU   761 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence	NA	coding protein	psRNATarget
CT837948.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =|*=|||||||||||||||=|||| targets:646   UUUUCUACAUUUAAUACUCUAUAC   669 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence	NA	coding protein	psRNATarget
AK072341.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =*|=|||=||||||||||||||=| targets:2445   UCGUCUAUAUUUAAUACUCCAUGC   2468 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =|*=|||=||||||||||||||=| targets:3165   UUUUCUAUAUUUAAUACUCCAUGC   3188 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
XM_015761412.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   =|*=|||=||||||||||=||||| targets:690   UUAUCUAUAUUUAAUACUUCAUAC   713 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget
XM_015757703.1	ncRNA:23   ACGGAUGUAAAUUAUGAGGUAUG   1   |*==||=|||||||||||||||| targets:1   UAUUUAUAUUUAAUACUCCAUAC   23 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative late blight resistance protein homolog R1B-16 (LOC9270671), transcript variant X2, mRNA	putative late blight resistance protein homolog R1B-16(LOC9270671)	coding protein	psRNATarget
AK288647.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   |*|*|||=||||||||||=||||| targets:2151   CAGACUAUAUUUAAUACUUCAUAC   2174 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
XM_015757702.1	ncRNA:22   CGGAUGUAAAUUAUGAGGUAUG   1   *==||=|||||||||||||||| targets:1   AUUUAUAUUUAAUACUCCAUAC   22 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative late blight resistance protein homolog R1B-16 (LOC9270671), transcript variant X1, mRNA	putative late blight resistance protein homolog R1B-16(LOC9270671)	coding protein	psRNATarget
XM_015757704.1	ncRNA:22   CGGAUGUAAAUUAUGAGGUAUG   1   *==||=|||||||||||||||| targets:1   AUUUAUAUUUAAUACUCCAUAC   22 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative late blight resistance protein homolog R1B-16 (LOC9270671), transcript variant X3, mRNA	putative late blight resistance protein homolog R1B-16(LOC9270671)	coding protein	psRNATarget
XM_015757705.1	ncRNA:22   CGGAUGUAAAUUAUGAGGUAUG   1   *==||=|||||||||||||||| targets:1   AUUUAUAUUUAAUACUCCAUAC   22 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative late blight resistance protein homolog R1B-16 (LOC9270671), transcript variant X4, mRNA	putative late blight resistance protein homolog R1B-16(LOC9270671)	coding protein	psRNATarget
AK067582.1	ncRNA:24   GACGGAUGUAAAUUAUGAGGUAUG   1   **||*||=||||||||||=||||| targets:1277   AAGCAUAUAUUUAAUACUUCAUAC   1300 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget