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BaseInfo

ncRNA ID	novel_osa_miR3558
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:1510093-1510221 [-]
Reference genome	IRGSP-1.0
Source	SRR2040391;SRR1609313;SRR1609315;SRR1609317;SRR1738227
Length	24
Mature sequence(if miRNA)	1 - AGAAGUUGAACUUGAACUUGCAUG - 24
Stem-loop(if miRNA)	--       AA  A         G   UC   C  CG            U    C  A  AUACA   UGCAAGU  AA UUCAACUUC ACA  UCG AA  AAAAAACAAAUU GACU UG GU     U   |||||||  || ||||||||| |||  ||| ||  |||||||||||| |||| || ||   ACGUUCA  UU AAGUUGAAG UGU  AGC UU  UUUUUUGUUUAA UUGG GC CG     U GU       AG  C         A   UU   A  AU            U    C  -  AUCAA
Stem-loop sequence	UGCAAGUAAAAAUUCAACUUCGACAUCUCGCAACGAAAAAACAAAUUUGACUCUGAGUAUACAUUAACUAGCCGCGGUUUAAUUUGUUUUUUUAUUACGAUUUGUAGAAGUUGAACUUGAACUUGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762405.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   |||||||||||||*|||||||||* targets:744   CAUGCAAGUUCAAAUUCAACUUCG   767 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762434.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   |||||||||||||*|||||||||* targets:811   CAUGCAAGUUCAAAUUCAACUUCG   834 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
JB164690.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ||||||||||*||*|||||||||| targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43 Target Full Sequence	2.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ||||||||||*||*|||||||||| targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43 Target Full Sequence	2.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
HI404229.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ||||||||||*||*|||||||||| targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43 Target Full Sequence	2.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015781215.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ||||||||||*||*|||||||||| targets:823   CAUGCAAGUUAAAAUUCAACUUCU   846 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA	putative beta-glucosidase 15(LOC107280799)	coding protein	psRNATarget
AK241681.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   =|||||||*||||*|||||||||| targets:1000   UAUGCAAGAUCAAAUUCAACUUCU   1023 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence	NA	coding protein	psRNATarget
AB109238.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ****|||||||||||||||*|||* targets:1844   GUCCCAAGUUCAAGUUCAAGUUCA   1867 Target Full Sequence	2.5	Oryza sativa Japonica Group OsASY1 mRNA for essential protein for meiotic synapsis, complete cds	NA	coding protein	psRNATarget
AK102636.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ****|||||||||||||||*|||* targets:1865   GUCCCAAGUUCAAGUUCAAGUUCA   1888 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033099N16, full insert sequence	NA	coding protein	psRNATarget
XM_015756786.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ****|||||||||||||||*|||* targets:1887   GUCCCAAGUUCAAGUUCAAGUUCA   1910 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group HORMA domain-containing protein 1 (LOC4347514), transcript variant X1, mRNA	HORMA domain-containing protein 1(LOC4347514)	coding protein	psRNATarget
AK064028.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ****|||||||||||||||*|||* targets:1905   GUCCCAAGUUCAAGUUCAAGUUCA   1928 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-125-B03, full insert sequence	NA	coding protein	psRNATarget
XM_015756787.1	ncRNA:24   GUACGUUCAAGUUCAAGUUGAAGA   1   ****|||||||||||||||*|||* targets:1900   GUCCCAAGUUCAAGUUCAAGUUCA   1923 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group HORMA domain-containing protein 1 (LOC4347514), transcript variant X2, mRNA	HORMA domain-containing protein 1(LOC4347514)	coding protein	psRNATarget