Search result

BaseInfo

ncRNA ID	novel_osa_miR3557
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:3225369-3225528 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	22
Mature sequence(if miRNA)	139 - UCACUCCACAAACAUACAAUGC - 160
Stem-loop(if miRNA)	--U     C        A   UGCC     UG    A  C      -CU              UAAA   AA  A   - A    CACUC ACAAACAU CAA    AAAUU  ACUU UA AAGUUG   AAAAAAUAACAAAU    UUG  AA AUA G U    ||||| |||||||| |||    |||||  |||| || ||||||   ||||||||||||||    |||  || ||| |    GUGAG UGUUUGUA GUU    UUUAA  UGAA AU UUUAAC   UUUUUUAUUGUUUA    GAC  UU UAU C A AUU     A        C   CAAU     GU    A  U      AUU              UAUC   GC  A   G U
Stem-loop sequence	UCACUCCACAAACAUACAAUGCCAAAUUUGACUUAUACAAGUUGCUAAAAAAUAACAAAUUAAAUUGAAAAAAUAGAUAUCGUAUAUUCGCAGCUAUAUUUGUUAUUUUUUUUACAAUUUUUAAAAGUUGAAUUUUAACUUGCAUGUUUGUAGAGUGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767317.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   *||||*|||||||||||||||| targets:1776   ACAUUAUAUGUUUGUGGAGUGA   1797 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ent-isokaurene C2-hydroxylase-like (LOC4328543), mRNA	ent-isokaurene C2-hydroxylase-like(LOC4328543)	coding protein	psRNATarget
AK243342.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   *||||*|||||||||||||||| targets:1669   ACAUUAUAUGUUUGUGGAGUGA   1690 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100059N12, full insert sequence	NA	coding protein	psRNATarget
AK070412.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   *=||||*||||||||||||||| targets:220   AUAUUGCAUGUUUGUGGAGUGA   241 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023054E23, full insert sequence	NA	coding protein	psRNATarget
AK072337.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   **|*|||||||||||||||||| targets:1647   UAACUGUAUGUUUGUGGAGUGA   1668 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023043H01, full insert sequence	NA	coding protein	psRNATarget
CT833231.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***||||||||||||||||||* targets:1291   UACUUGUAUGUUUGUGGAGUGU   1312 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053D08, full insert sequence	NA	coding protein	psRNATarget
HI404353.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***||||||||||||||||||* targets:143   AACUUGUAUGUUUGUGGAGUGU   164 Target Full Sequence	1.0	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***||||||||||||||||||* targets:143   AACUUGUAUGUUUGUGGAGUGU   164 Target Full Sequence	1.0	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***||||||||||||||||||* targets:143   AACUUGUAUGUUUGUGGAGUGU   164 Target Full Sequence	1.0	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015789704.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ||-|||||||||||||||||*| targets:1498   GC-UUGUAUGUUUGUGGAGUAA   1518 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative transcription factor bHLH041 (LOC4327324), mRNA	putative transcription factor bHLH041(LOC4327324)	coding protein	psRNATarget
AK288287.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   *|||||*|||||||||||||*| targets:4418   ACAUUGCAUGUUUGUGGAGUAA   4439 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090018F21, full insert sequence	NA	coding protein	psRNATarget
AK242917.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   *==|||||||||||||||*||= targets:1613   UUGUUGUAUGUUUGUGGAUUGG   1634 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084D18, full insert sequence	NA	coding protein	psRNATarget
XM_015762434.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||||||| targets:930   AACUUGCAUGUUUGUGGAGUGA   951 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762405.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||||||| targets:863   AACUUGCAUGUUUGUGGAGUGA   884 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
AK070165.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ||=||**||||||||||||||= targets:733   GCGUUCGAUGUUUGUGGAGUGG   754 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023047C04, full insert sequence	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||||||||||||||||*| targets:139   AACUUGUAUGUUUGUGGAGUUA   160 Target Full Sequence	1.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
HI404229.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||||||||||||||||*| targets:139   AACUUGUAUGUUUGUGGAGUUA   160 Target Full Sequence	1.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
JB164690.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||||||||||||||||*| targets:139   AACUUGUAUGUUUGUGGAGUUA   160 Target Full Sequence	1.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
AK288928.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ||*||**||||||||||||||| targets:4416   GCCUUACAUGUUUGUGGAGUGA   4437 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
XM_015788270.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||=|||| targets:347   AACUUGCAUGUUUGUGGGGUGA   368 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X1, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
XM_015788271.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||=|||| targets:347   AACUUGCAUGUUUGUGGGGUGA   368 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X2, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
AK110839.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||||||* targets:1291   UACUUGCAUGUUUGUGGAGUGU   1312 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-172-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015756961.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ***|||*||||||||||||||* targets:1289   UACUUGCAUGUUUGUGGAGUGU   1310 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347194 (LOC4347194), mRNA	uncharacterized LOC4347194(LOC4347194)	coding protein	psRNATarget
AK289164.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   ****||||||||||||||||*| targets:708   AACCUGUAUGUUUGUGGAGUAA   729 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100008H02, full insert sequence	NA	coding protein	psRNATarget
XM_015795533.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   |=*|||||*|||||*||||||| targets:225   GUUUUGUAAGUUUGGGGAGUGA   246 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X1, mRNA	DNA polymerase zeta processivity subunit(LOC4346177)	coding protein	psRNATarget
XM_015795534.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   |=*|||||*|||||*||||||| targets:225   GUUUUGUAAGUUUGGGGAGUGA   246 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X2, mRNA	DNA polymerase zeta processivity subunit(LOC4346177)	coding protein	psRNATarget
AK065928.1	ncRNA:22   CGUAACAUACAAACACCUCACU   1   **||||*=*||||||||||||| targets:801   AAAUUGCGCGUUUGUGGAGUGA   822 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013044J03, full insert sequence	NA	coding protein	psRNATarget