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BaseInfo

ncRNA ID	novel_osa_miR3556
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:11323730-11323825 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	21
Mature sequence(if miRNA)	76 - UUUUUUCUCGAUGUGUAGAUC - 96
Stem-loop(if miRNA)	--  -           UAU               C  C               UC ACACGUCGAGA   AAAAAAAGACAAAUU AG GUAUAAAUAGUAG   || |||||||||||   ||||||||||||||| || ||||||||||||C   AG UGUGUAGCUCU   UUUUUUUCUGUUUAA UC UAUAUUUGUCAUG CU  A           ---               A  -
Stem-loop sequence	UCACACGUCGAGAUAUAAAAAAAGACAAAUUCAGCGUAUAAAUAGUAGCGUACUGUUUAUAUCUAAAUUUGUCUUUUUUUUCUCGAUGUGUAGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064976.1	ncRNA:21   CUAGAUGUGUAGCUCUUU-UUU   1   ||||||||||||||||||-||| targets:874   GAUCUACACAUCGAGAAACAAA   895 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013001B23, full insert sequence	NA	coding protein	psRNATarget
CT834684.1	ncRNA:21   CUAGAUGUGUAGCUCUUU-UUU   1   ||||||||||||||||||-||| targets:907   GAUCUACACAUCGAGAAACAAA   928 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064H11, full insert sequence	NA	coding protein	psRNATarget
CT833676.1	ncRNA:21   CUAGAUGUGUAGCUCUUU-UUU   1   ||||||||||||||||||-||| targets:904   GAUCUACACAUCGAGAAACAAA   925 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041C07, full insert sequence	NA	coding protein	psRNATarget
AK061723.1	ncRNA:21   CUAGAUGUGUAGCUCUUU-UUU   1   ||||||||||||||||||-||| targets:864   GAUCUACACAUCGAGAAACAAA   885 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-038-A06, full insert sequence	NA	coding protein	psRNATarget
XM_015777663.1	ncRNA:21   CUAGAUGUGUAGCUCUUU-UUU   1   ||||||||||||||||||-||| targets:2003   GAUCUACACAUCGAGAAACAAA   2024 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334853 (LOC4334853), mRNA	uncharacterized LOC4334853(LOC4334853)	coding protein	psRNATarget
AK101881.1	ncRNA:21   CUAGAUGUGUAGCUCUUUUUU   1   *|||||=|||||||*|||||| targets:3605   AAUCUAUACAUCGAAAAAAAA   3625 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033070K10, full insert sequence	NA	coding protein	psRNATarget
XM_015763390.1	ncRNA:21   CUAGAUGUGUAGCUCUUUUUU   1   **|||*|||||||||||=||| targets:11   CUUCUUCACAUCGAGAAGAAA   31 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoribosylamine--glycine ligase (LOC4351721), transcript variant X2, mRNA	phosphoribosylamine--glycine ligase(LOC4351721)	coding protein	psRNATarget