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BaseInfo

ncRNA ID	novel_osa_miR3555
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:6939773-6939829 [-]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	19
Mature sequence(if miRNA)	39 - UUUGGCACAACUCUAGCUC - 57
Stem-loop(if miRNA)	--      ACAA         CUUCUCC   UUUGGC    CUCUAGCUC       A   ||||||    |||||||||       C   AAACCG    GAGAUUGAG       C AC      ACUC         AUCCUCU
Stem-loop sequence	UUUGGCACAACUCUAGCUCCUUCUCCACCUCUCCUAGAGUUAGAGCUCAGCCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015775467.1	ncRNA:19   CUCGAUCUCAACACGGUUU   1   ||||||||||||||||||| targets:1462   GAGCUAGAGUUGUGCCAAA   1480 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group elongation of fatty acids protein 3-like (LOC4333830), mRNA	elongation of fatty acids protein 3-like(LOC4333830)	coding protein	psRNATarget
AK101220.1	ncRNA:19   CUCGAUCUCAACACGGUUU   1   |||||=|||*||||||||| targets:1226   GAGCUGGAGCUGUGCCAAA   1244 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033031C20, full insert sequence	NA	coding protein	psRNATarget
XM_015768148.1	ncRNA:19   CUCGAUCUCAACACGGUUU   1   |||||=|||*||||||||| targets:1255   GAGCUGGAGCUGUGCCAAA   1273 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chorismate mutase 2 (LOC4328508), mRNA	chorismate mutase 2(LOC4328508)	coding protein	psRNATarget
XM_015790197.1	ncRNA:19   CUCGAUCUCAACACGGUUU   1   |||||=|||*||||||||| targets:270   GAGCUGGAGCUGUGCCAAA   288 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pectinesterase (LOC4344369), mRNA	pectinesterase(LOC4344369)	coding protein	psRNATarget
AK288250.1	ncRNA:19   CUCGAUCUCAACACGGUUU   1   ||||*|*|||||||||||| targets:1846   GAGCCAAAGUUGUGCCAAA   1864 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015A01, full insert sequence	NA	coding protein	psRNATarget