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BaseInfo

ncRNA ID	novel_osa_miR3552
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4096987-4097194 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097778;SRR2097779;SRR2098560;SRR2098823;SRR2099567;SRR2099745;SRR4407775;SRR4407777;SRR4407779;SRR1556020
Length	22
Mature sequence(if miRNA)	187 - AGAUGACGCUGUUGACUUUUUG - 208
Stem-loop(if miRNA)	--        C           UGU  CAC      C    AAU    U  AAAAAAUUUAC    UU   --    -  UUUGUUGUGAAUUAUUUUAUCAUUUAAAA   AGAUGACG UGUUGACUUUU   CA   GUUUGA UAUU   UUUA UC           AUAA  AUA  AUUU AU                             U   |||||||| |||||||||||   ||   |||||| ||||   |||| ||           ||||  |||  |||| ||                             A   UCUACUGU AUAACUGGAAA   GU   CAAACU GUGA   AAAU AG           AAAU  UUU  AAAU CG                             C UA        A           UUU  AUA      A    -GC    C  -----CAGAAC    --   UU    A  UUUAUAUAUUCUAUAUUUAGUACGAAUUU
Stem-loop sequence	AGAUGACGCUGUUGACUUUUUGUCACACGUUUGACUAUUAAUUUUAUUCAAAAAAUUUACAUAAUUAUAAUUUAUUUUGUUGUGAAUUAUUUUAUCAUUUAAAAUACUUUAAGCAUGAUUUAUAUCUUAUAUAUUUGCAUAAAUUUUUUAAACAAGACGACUAAACGAGUGAUCAAACAUAUGUUUAAAGGUCAAUAAUGUCAUCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   ||||||||||||=||||||||| targets:815   CAAAAAGUCAACGGCGUCAUCU   836 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   ||||||||||||=||||||||| targets:2835   CAAAAAGUCAACGGCGUCAUCU   2856 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
XM_015777115.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *||||||||||||||||||||| targets:5   GAAAAAGUCAACAGCGUCAUCU   26 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331961 (LOC4331961), mRNA	uncharacterized LOC4331961(LOC4331961)	coding protein	psRNATarget
AK288773.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *||||||||||||||||||||| targets:3907   GAAAAAGUCAACAGCGUCAUCU   3928 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090068D07, full insert sequence	NA	coding protein	psRNATarget
CT832797.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:780   GAAAAAGUCAACGGCGUCAUCU   801 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N07, full insert sequence	NA	coding protein	psRNATarget
AK068336.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:1061   GAAAAAGUCAACGGCGUCAUCU   1082 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013149H05, full insert sequence	NA	coding protein	psRNATarget
XM_015795035.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:1236   GAAAAAGUCAACGGCGUCAUCU   1257 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 10 (LOC4325933), transcript variant X1, mRNA	calcineurin B-like protein 10(LOC4325933)	coding protein	psRNATarget
XM_015766756.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:2001   GAAAAAGUCAACGGCGUCAUCU   2022 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA	probable glucuronosyltransferase Os01g0926600(LOC4327242)	coding protein	psRNATarget
AK288827.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:1413   GAAAAAGUCAACGGCGUCAUCU   1434 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence	NA	coding protein	psRNATarget
AK289053.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:785   GAAAAAGUCAACGGCGUCAUCU   806 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090092P21, full insert sequence	NA	coding protein	psRNATarget
AK288309.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:1053   GAAAAAGUCAACGGCGUCAUCU   1074 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget
XM_015762743.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   *|||||||||||=||||||||| targets:58   GAAAAAGUCAACGGCGUCAUCU   79 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 1 (LOC107276851), mRNA	putative disease resistance RPP13-like protein 1(LOC107276851)	coding protein	psRNATarget
AK241507.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   =*|||||||||||||||||||* targets:1726   UCAAAAGUCAACAGCGUCAUCC   1747 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065168E20, full insert sequence	NA	coding protein	psRNATarget
CT837262.1	ncRNA:22   GUUUUUCAGUUGUCGCAGUAGA   1   ||*||=||||||||*||||||| targets:1088   CACAAGGUCAACAGAGUCAUCU   1109 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120L01, full insert sequence	NA	coding protein	psRNATarget