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BaseInfo

ncRNA ID	novel_osa_miR3550
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:8503890-8503955 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AAUUCGUUGUACUAGGAUGUGCUA - 24
Stem-loop(if miRNA)	-GA         A     UA   C            UAUAUCCUA UACAA  AAU UGGAUAUAC    ||||||||| |||||  ||| ||||||||U    GUGUAGGAU AUGUU  UUA ACCUAUAUC AUC         C     GC   A
Stem-loop sequence	GAUAUAUCCUAAUACAAUAAAUCUGGAUAUACUCUAUAUCCAAAUUCGUUGUACUAGGAUGUGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403967.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   ||*|||||||||||||||=||||* targets:20   UAACACAUCCUAGUACAAUGAAUC   43 Target Full Sequence	2.5	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   ||*|||||||||||||||=||||* targets:20   UAACACAUCCUAGUACAAUGAAUC   43 Target Full Sequence	2.5	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   ||*|||||||||||||||=||||* targets:20   UAACACAUCCUAGUACAAUGAAUC   43 Target Full Sequence	2.5	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget
AK241705.1	ncRNA:24   AUC--GUGUAGGAUCAUGUUGCUUAA   1   |=|--=||||=||||||||||||||| targets:3338   UGGGAUACAUUCUAGUACAACGAAUU   3363 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
XM_015785407.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||||||*||||||||||| targets:1695   UGACACAUCCUAAUACAACGAAUU   1718 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mitochondrial phosphate carrier protein 3, mitochondrial (LOC4340459), mRNA	mitochondrial phosphate carrier protein 3, mitochondrial(LOC4340459)	coding protein	psRNATarget
XM_015778607.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*||=||=||||||||||||||* targets:1055   UGACAUAUUCUAGUACAACGAAUC   1078 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
HI404542.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||=||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	2.5	Sequence 2667 from Patent EP2074227	NA	coding protein	psRNATarget
JB165003.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||=||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	2.5	Sequence 2667 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236672.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||=||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	2.5	Sequence 2667 from Patent EP2985353	NA	coding protein	psRNATarget
AK289139.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*=|||||||||||||||*|||| targets:1316   UGAUACAUCCUAGUACAACAAAUU   1339 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:24   AUC--GUGUAGGAUCAUGUUGCUUAA   1   |=|--|||||||||||||*||||||* targets:3902   UGGGACACAUCCUAGUACUACGAAUC   3927 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
XM_015780739.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*||||||||||||*|||||||* targets:885   UGACACAUCCUAGUAAAACGAAUC   908 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780740.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*||||||||||||*|||||||* targets:885   UGACACAUCCUAGUAAAACGAAUC   908 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780738.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*||||||||||||*|||||||* targets:885   UGACACAUCCUAGUAAAACGAAUC   908 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
CT834783.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   ||*=|=|||*|||||||||||||* targets:565   UAUUAUAUCAUAGUACAACGAAUC   588 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K12, full insert sequence	NA	coding protein	psRNATarget
AK071898.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||=*|||||||||||||* targets:2680   UGACACAUUAUAGUACAACGAAUC   2703 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|||||=*|||||||||||||* targets:2696   UGACACAUUAUAGUACAACGAAUC   2719 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
JB164636.1	ncRNA:24   AUC-GUGUAGGAUCAUGUUGCUUAA   1   *||-===||||||||||*||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAUU   46 Target Full Sequence	2.5	Sequence 2300 from Patent EP2559767	NA	coding protein	psRNATarget
HI404175.1	ncRNA:24   AUC-GUGUAGGAUCAUGUUGCUUAA   1   *||-===||||||||||*||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAUU   46 Target Full Sequence	2.5	Sequence 2300 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236305.1	ncRNA:24   AUC-GUGUAGGAUCAUGUUGCUUAA   1   *||-===||||||||||*||||||| targets:22   GAGAUGUAUCCUAGUACUACGAAUU   46 Target Full Sequence	2.5	Sequence 2300 from Patent EP2985353	NA	coding protein	psRNATarget
AK241315.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*==|||||||*||||||||||* targets:419   UGAUGCAUCCUAUUACAACGAAUC   442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065142A02, full insert sequence	NA	coding protein	psRNATarget
AK111992.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|*|*||||||||||||||||* targets:699   UGACCCCUCCUAGUACAACGAAUC   722 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence	NA	coding protein	psRNATarget
XM_015789120.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|*|*||||||||||||||||* targets:1260   UGACCCCUCCUAGUACAACGAAUC   1283 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
XM_015789119.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|*|*||||||||||||||||* targets:1355   UGACCCCUCCUAGUACAACGAAUC   1378 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
AK102332.1	ncRNA:24   AUCGUGUAGGAUCAUGUUGCUUAA   1   |=*|*|*||||||||||||||||* targets:1759   UGACCCCUCCUAGUACAACGAAUC   1782 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence	NA	coding protein	psRNATarget